Absolute path used in Rules

kernco / functional-annotation

Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.

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Open SichongP opened 5 years ago

SichongP commented 5 years ago

Line 21 of functional-annotation/Rules/ChIPMetrics.smk

Rscript /home/ckern/phantompeakqualtools/run_spp.R

Uses absolute path. I can't find run_spp.R script in Scripts directory either.

kernco commented 5 years ago

Until I get this fixed, you can download the script here: https://github.com/kundajelab/phantompeakqualtools and then change that path to your own.