update dependencies, remove notebook examples

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 45.05%. Comparing base (0c94078) to head (0de8ee6).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #75 +/- ## ========================================== + Coverage 43.55% 45.05% +1.49% ========================================== Files 28 26 -2 Lines 2613 2526 -87 ========================================== Hits 1138 1138 + Misses 1475 1388 -87 ```

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