Fixes and enhancements

[keurfonluu]

• Added: new function write_h5 to gather outputs in a single H5 container
• Added: option labels_order in read_output
• Added: support GENER file in toughio-merge
• Added: function run to run TOUGH from a Python script
• Added: support MINC input in MESHM block
• Added: option space_between_values to add an additional space between entries (True by default).
• Fixed: incorrect block TIMBC output
• Fixed: error when writing input when center is None
• Fixed: error when reading GENER file that ends with +++
• Fixed: error due to coordinate precision for ISOT (fixes #141)
• Fixed: error when reading output written by T2WELL (fixes #142)
• Changed: lines after +++ are read as ending comments
• Changed: better formatting to improve accuracy (e.g., 1.0e+05 -> 1.0e5)

Reminders:

• [x] Run invoke format to make sure the code follows the style guide,
• [x] Add tests for new features or tests that would have caught the bug that you're fixing,
• [x] Write detailed docstrings for all functions, classes and/or methods,
• [x] If adding new functionality, unit test it and add it to the documentation.

[codecov[bot]]

Codecov Report

Patch coverage: 82.15% and project coverage change: -0.79% :warning:

Comparison is base (6094bb7) 91.27% compared to head (c43fc24) 90.48%. Report is 7 commits behind head on master.

:exclamation: Current head c43fc24 differs from pull request most recent head e987c44. Consider uploading reports for the commit e987c44 to get more accurate results

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #144 +/- ## ========================================== - Coverage 91.27% 90.48% -0.79% ========================================== Files 94 97 +3 Lines 6061 6148 +87 ========================================== + Hits 5532 5563 +31 - Misses 529 585 +56 ``` | [Files Changed](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu) | Coverage Δ | | |---|---|---| | [toughio/\_cli/\_extract.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9fY2xpL19leHRyYWN0LnB5) | `87.23% <ø> (+1.51%)` | :arrow_up: | | [toughio/\_io/output/tecplot/\_\_init\_\_.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9faW8vb3V0cHV0L3RlY3Bsb3QvX19pbml0X18ucHk=) | `100.00% <ø> (ø)` | | | [toughio/\_run.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9fcnVuLnB5) | `12.69% <12.69%> (ø)` | | | [toughio/\_io/output/\_helpers.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9faW8vb3V0cHV0L19oZWxwZXJzLnB5) | `83.67% <60.00%> (+0.69%)` | :arrow_up: | | [toughio/\_mesh/\_mesh.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9fbWVzaC9fbWVzaC5weQ==) | `88.54% <66.66%> (-0.03%)` | :arrow_down: | | [toughio/\_cli/\_merge.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9fY2xpL19tZXJnZS5weQ==) | `83.33% <72.41%> (-5.80%)` | :arrow_down: | | [toughio/\_io/input/\_helpers.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9faW8vaW5wdXQvX2hlbHBlcnMucHk=) | `82.85% <80.00%> (-1.52%)` | :arrow_down: | | [toughio/\_common.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9fY29tbW9uLnB5) | `92.68% <85.71%> (-2.97%)` | :arrow_down: | | [toughio/\_io/h5/\_write.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9faW8vaDUvX3dyaXRlLnB5) | `92.00% <92.00%> (ø)` | | | [toughio/\_io/input/tough/\_write.py](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu#diff-dG91Z2hpby9faW8vaW5wdXQvdG91Z2gvX3dyaXRlLnB5) | `93.67% <95.31%> (-0.33%)` | :arrow_down: | | ... and [17 more](https://app.codecov.io/gh/keurfonluu/toughio/pull/144?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Keurfon+Luu) | |

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.