kevin218
commented
1 year ago Can you make sure you're using the latest version of Eureka!? The latest version doesn't use meta.isplots in Stage 1.
Closed amitmazz closed 1 year ago
kevin218
commented
1 year ago Can you make sure you're using the latest version of Eureka!? The latest version doesn't use meta.isplots in Stage 1.
taylorbell57
commented
1 year ago It appears you are using an old version of Eureka (although I cannot confirm which exact version you are using as you did not populate the "What Python packages do you have installed?" field). With the code that is currently on the main branch (the recommended version if you're trying to do Group-Level Background Subtraction, you would not get that error message (isplots has been renamed to isplots_S1). We're just about to release version 0.9 (likely in 1-2 weeks) which will be a stable release that resolves numerous issues and addes numerous features. For now though, you'll need to make use of the code that's on the main branch.
Please update your Eureka! version to the most up-to-date version of the code (pip install --upgrade git+https://github.com/kevin218/Eureka.git@main#egg=eureka[jwst] should work), make sure your ECF template is based on the most up-to-date version of the code, and try again.
amitmazz
commented
1 year ago Thank you. The issue was resolved as per your suggestions. Although I am getting the following warning while running stage 1:
*2023-04-04 11:00:42,882 - stpipe.Eureka_RampFitStep - WARNING - /home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:38: ValidationWarning: While validating meta.exposure.p_readpatt the following error occurred: 'NRS|NRSRAPID' does not match '^((ACQ1|ACQ2|BRIGHT1|BRIGHT2|DEEP2|DEEP8|FAST|FASTGRPAVG|FASTGRPAVG8|FASTGRPAVG16|FASTGRPAVG32|FASTGRPAVG64|FASTR1|FASTR100|FGS|FGS60|FGS8370|FGS840|FGSRAPID|FINEGUIDE|ID|MEDIUM2|MEDIUM8|NIS|NISRAPID|NRS|NRSIRS2|NRSN16R4|NRSN32R8|NRSN8R2|NRSRAPID|NRSIRS2RAPID|NRSRAPIDD1|NRSRAPIDD2|NRSRAPIDD6|NRSSLOW|RAPID|SHALLOW2|SHALLOW4|SLOW|SLOWR1|TRACK|ANY|N/A)\s\|\s*)+$'
Failed validating 'pattern' in schema: OrderedDict([('title', 'Readout pattern'), ('type', 'string'), ('pattern', '^((ACQ1|ACQ2|BRIGHT1|BRIGHT2|DEEP2|DEEP8|FAST|FASTGRPAVG|FASTGRPAVG8|FASTGRPAVG16|FASTGRPAVG32|FASTGRPAVG64|FASTR1|FASTR100|FGS|FGS60|FGS8370|FGS840|FGSRAPID|FINEGUIDE|ID|MEDIUM2|MEDIUM8|NIS|NISRAPID|NRS|NRSIRS2|NRSN16R4|NRSN32R8|NRSN8R2|NRSRAPID|NRSIRS2RAPID|NRSRAPIDD1|NRSRAPIDD2|NRSRAPIDD6|NRSSLOW|RAPID|SHALLOW2|SHALLOW4|SLOW|SLOWR1|TRACK|ANY|N/A)\s\|\s)+$'), ('fits_keyword', 'P_READPA')])
On instance: 'NRS|NRSRAPID' warnings.warn(errmsg, ValidationWarning)**
Should I be worried about this?
taylorbell57
commented
1 year ago This error message is a new issue, and you've already opened a different issue about this on GitHub, so I'm going to mark this original issue as resolved here
Instrument
NIRSpec (Stages 1-3)
What happened?
I was running stage 1 using the ecf file S1_nirx_template.ecf. The source is wasp39-b and I had the nrs1 data. It stopped at an a error which I fixed. Later I am getting the following thing:
Starting Stage 1 Processing Input directory: /home/amit/Eureka_files/JWST/uncalibrated/ Output directory: /home/amit/Eureka_files/JWST/Stage1/S1_2023-04-04_nirspec_fs_template_run3/ Copying S1 control file
Found 4 data file(s) ending in uncal.fits Starting file 1 of 4: jw01366004001_04101_00001-seg001_nrs1_uncal.fits 2023-04-04 00:09:41,328 - stpipe.EurekaS1Pipeline - INFO - EurekaS1Pipeline instance created. 2023-04-04 00:09:41,328 - stpipe.EurekaS1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2023-04-04 00:09:41,329 - stpipe.EurekaS1Pipeline.dq_init - INFO - DQInitStep instance created. 2023-04-04 00:09:41,330 - stpipe.EurekaS1Pipeline.saturation - INFO - SaturationStep instance created. 2023-04-04 00:09:41,330 - stpipe.EurekaS1Pipeline.ipc - INFO - IPCStep instance created. 2023-04-04 00:09:41,331 - stpipe.EurekaS1Pipeline.superbias - INFO - SuperBiasStep instance created. 2023-04-04 00:09:41,332 - stpipe.EurekaS1Pipeline.refpix - INFO - RefPixStep instance created. 2023-04-04 00:09:41,332 - stpipe.EurekaS1Pipeline.rscd - INFO - RscdStep instance created. 2023-04-04 00:09:41,333 - stpipe.EurekaS1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2023-04-04 00:09:41,334 - stpipe.EurekaS1Pipeline.lastframe - INFO - LastFrameStep instance created. 2023-04-04 00:09:41,334 - stpipe.EurekaS1Pipeline.linearity - INFO - LinearityStep instance created. 2023-04-04 00:09:41,335 - stpipe.EurekaS1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2023-04-04 00:09:41,335 - stpipe.EurekaS1Pipeline.reset - INFO - ResetStep instance created. 2023-04-04 00:09:41,336 - stpipe.EurekaS1Pipeline.persistence - INFO - PersistenceStep instance created. 2023-04-04 00:09:41,337 - stpipe.EurekaS1Pipeline.jump - INFO - JumpStep instance created. 2023-04-04 00:09:41,338 - stpipe.EurekaS1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2023-04-04 00:09:41,338 - stpipe.EurekaS1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2023-04-04 00:09:41,340 - stpipe.Eureka_RampFitStep - INFO - Eureka_RampFitStep instance created. 2023-04-04 00:09:41,486 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline running with args ('/home/amit/Eureka_files/JWST/uncalibrated/jw01366004001_04101_00001-seg001_nrs1_uncal.fits',). 2023-04-04 00:09:41,494 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/home/amit/Eureka_files/JWST/Stage1/S1_2023-04-04_nirspec_fs_template_run3/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}} 2023-04-04 00:09:42,650 - stpipe.EurekaS1Pipeline - INFO - Prefetching reference files for dataset: 'jw01366004001_04101_00001-seg001_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias'] 2023-04-04 00:09:45,075 - stpipe.EurekaS1Pipeline - INFO - Prefetch for DARK reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0322.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for GAIN reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0027.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for MASK reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0035.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0029.fits'. 2023-04-04 00:09:45,076 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0304.fits'. 2023-04-04 00:09:45,077 - stpipe.EurekaS1Pipeline - INFO - Starting calwebb_detector1 ... 2023-04-04 00:09:46,370 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:09:46,371 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated'} 2023-04-04 00:09:46,900 - stpipe.EurekaS1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2023-04-04 00:09:46,900 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step will be skipped 2023-04-04 00:09:46,902 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale done 2023-04-04 00:09:47,019 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:09:47,020 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated'} 2023-04-04 00:09:47,039 - stpipe.EurekaS1Pipeline.dq_init - INFO - Using MASK reference file /home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0035.fits 2023-04-04 00:09:47,689 - stpipe.EurekaS1Pipeline.dq_init - INFO - Extracting mask subarray to match science data 2023-04-04 00:09:47,702 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init done 2023-04-04 00:09:47,820 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:09:47,820 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated', 'n_pix_grow_sat': 1} 2023-04-04 00:09:47,840 - stpipe.EurekaS1Pipeline.saturation - INFO - Using SATURATION reference file /home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0029.fits 2023-04-04 00:09:48,396 - stpipe.EurekaS1Pipeline.saturation - INFO - Extracting reference file subarray to match science data 2023-04-04 00:09:59,853 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 705 saturated pixels 2023-04-04 00:09:59,971 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2023-04-04 00:09:59,979 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation done 2023-04-04 00:10:00,217 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:00,218 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated'} 2023-04-04 00:10:00,218 - stpipe.EurekaS1Pipeline.ipc - INFO - Step skipped. 2023-04-04 00:10:00,221 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc done 2023-04-04 00:10:00,504 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:00,505 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated'} 2023-04-04 00:10:00,532 - stpipe.EurekaS1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0304.fits 2023-04-04 00:10:01,493 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias done 2023-04-04 00:10:01,832 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:01,833 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2023-04-04 00:10:02,368 - stpipe.EurekaS1Pipeline.refpix - INFO - NIR subarray data 2023-04-04 00:10:02,370 - stpipe.EurekaS1Pipeline.refpix - INFO - Single readout amplifier used 2023-04-04 00:10:02,370 - stpipe.EurekaS1Pipeline.refpix - INFO - No valid reference pixels. This step wil have no effect 2023-04-04 00:10:02,390 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix done 2023-04-04 00:10:02,676 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:02,677 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated'} 2023-04-04 00:10:02,698 - stpipe.EurekaS1Pipeline.linearity - INFO - Using Linearity reference file /home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits 2023-04-04 00:10:02,747 - stpipe.EurekaS1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2023-04-04 00:10:06,340 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity done 2023-04-04 00:10:06,502 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:06,503 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/home/amit/Eureka_files/JWST/Stage1/S1_2023-04-04_nirspec_fs_template_run3/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated', 'dark_output': None} 2023-04-04 00:10:06,522 - stpipe.EurekaS1Pipeline.dark_current - INFO - Using DARK reference file /home/amit/Eureka_files_2/temp/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0322.fits 2023-04-04 00:10:06,572 - stpipe.EurekaS1Pipeline.dark_current - INFO - Science data nints=6100, ngroups=5, nframes=1, groupgap=0 2023-04-04 00:10:06,573 - stpipe.EurekaS1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=1, groupgap=0 2023-04-04 00:10:08,058 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current done 2023-04-04 00:10:08,201 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:08,202 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/home/amit/Eureka_files/JWST/uncalibrated', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2023-04-04 00:10:08,202 - stpipe.EurekaS1Pipeline.jump - INFO - Step skipped. 2023-04-04 00:10:08,204 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump done 2023-04-04 00:10:08,325 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep running with args (<RampModel(6100, 5, 32, 512) from jw01366004001_04101_00001-seg001_nrs1_uncal.fits>,). 2023-04-04 00:10:08,326 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/home/amit/Eureka_files/JWST/Stage1/S1_2023-04-04_nirspec_fs_template_run3/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} Masking Curved Trace. Running Group Level Background Subtraction. Performing background subtraction... 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6100/6100 [00:08<00:00, 695.30it/s] Performing background subtraction... 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6100/6100 [00:08<00:00, 688.23it/s] Performing background subtraction... 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6100/6100 [00:08<00:00, 687.75it/s] Performing background subtraction... 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6100/6100 [00:08<00:00, 691.51it/s] Traceback (most recent call last): File "/home/amit/Eureka_files/JWST/run_eureka.py", line 21, in
s1_meta = s1.rampfitJWST(eventlabel, ecf_path=ecf_path)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/s1_process.py", line 108, in rampfitJWST
EurekaS1Pipeline().run_eurekaS1(filename, meta, log)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/s1_process.py", line 221, in run_eurekaS1
self(filename)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 454, in run
step_result = self.process(args)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/jwst/pipeline/calwebb_detector1.py", line 134, in process
input, ints_model = self.ramp_fit(input)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 454, in run
step_result = self.process(args)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/ramp_fitting.py", line 113, in process
input_model = group_level.GLBS(input_model,
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/group_level.py", line 67, in GLBS
meta.isplots)
AttributeError: 'MetaClass' object has no attribute 'isplots'
Error traceback output
Traceback (most recent call last): File "/home/amit/Eureka_files/JWST/run_eureka.py", line 21, in
s1_meta = s1.rampfitJWST(eventlabel, ecf_path=ecf_path)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/s1_process.py", line 108, in rampfitJWST
EurekaS1Pipeline().run_eurekaS1(filename, meta, log)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/s1_process.py", line 221, in run_eurekaS1
self(filename)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 454, in run
step_result = self.process(args)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/jwst/pipeline/calwebb_detector1.py", line 134, in process
input, ints_model = self.ramp_fit(input)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 454, in run
step_result = self.process(args)
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/ramp_fitting.py", line 113, in process
input_model = group_level.GLBS(input_model,
File "/home/amit/anaconda3/envs/eureka/lib/python3.9/site-packages/eureka/S1_detector_processing/group_level.py", line 67, in GLBS
meta.isplots)
AttributeError: 'MetaClass' object has no attribute 'isplots'
What operating system are you using?
Linux-Ubuntu
What version of Python are you running?
python 3.9.13
What Python packages do you have installed?
No response
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