Instrument

NIRSpec (Stages 1-3)

What happened?

I was previously able to cleanly install Eureka v0.9 on a machine with Ubuntu 18.04, but now I need to install it on an AWS instance, with Amazon Linux 2, and I'm having problems. I had v0.8 installed previously on the AWS instance successfully, so I don't think it's an AWS/OS issue. It seems to be failing in the "pip install -e '.[jwst]'" step, specifically at "Building editable for eureka (pyproject.toml) . . . ". I tried the 'pip only' installation too, but got the same result. I tried updating the setuptools pkg, but that didn't solve the problem. Any thoughts would be appreciated.

Error traceback output

(eureka) [ec2-user@ip-172-31-4-143 Eureka]$ pip install -e '.[jwst]' Obtaining file:///home/ec2-user/Eureka Installing build dependencies ... done Checking if build backend supports build_editable ... done Getting requirements to build editable ... done Preparing editable metadata (pyproject.toml) ... done Collecting astraeus@ git+https://github.com/kevin218/Astraeus@main Cloning https://github.com/kevin218/Astraeus (to revision main) to /tmp/pip-install-nfyhsygq/astraeus_40b239fc031a4c6da1c3b54ebc0add71 Running command git clone --filter=blob:none --quiet https://github.com/kevin218/Astraeus /tmp/pip-install-nfyhsygq/astraeus_40b239fc031a4c6da1c3b54ebc0add71 Resolved https://github.com/kevin218/Astraeus to commit 14c2e434e6f40185cf64978c745f1de796f1ace5 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting celerite Using cached celerite-0.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (295 kB) Collecting photutils Using cached photutils-1.7.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (855 kB) Collecting numpy<=1.22,>=1.20.0 Using cached numpy-1.22.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) Collecting george Using cached george-0.4.0-cp39-cp39-manylinux2014_x86_64.whl (404 kB) Collecting pandas Using cached pandas-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB) Collecting crds Using cached crds-11.16.22-py3-none-any.whl (1.2 MB) Collecting cython Using cached Cython-0.29.34-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (2.0 MB) Collecting h5py<3.2 Using cached h5py-3.1.0-cp39-cp39-manylinux1_x86_64.whl (4.4 MB) Collecting corner Using cached corner-2.2.2-py3-none-any.whl (15 kB) Collecting ccdproc Using cached ccdproc-2.4.0-py3-none-any.whl (355 kB) Collecting scipy>=1.4.0 Using cached scipy-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB) Collecting batman-package Using cached batman_package-2.4.9-cp39-cp39-linux_x86_64.whl Collecting gwcs Using cached gwcs-0.18.3-py3-none-any.whl (108 kB) Collecting bokeh<3.0 Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) Collecting matplotlib Using cached matplotlib-3.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) Collecting jsonschema<4.10.0 Using cached jsonschema-4.9.1-py3-none-any.whl (79 kB) Collecting astropy Using cached astropy-5.2.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (11.2 MB) Collecting dask<2022.6.1 Using cached dask-2022.6.0-py3-none-any.whl (1.1 MB) Collecting stdatamodels Using cached stdatamodels-1.3.1-py3-none-any.whl (297 kB) Requirement already satisfied: setuptools-scm in /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/site-packages (from eureka==0.9) (7.1.0) Collecting emcee>3.0.0 Using cached emcee-3.1.4-py2.py3-none-any.whl (46 kB) Collecting dynesty>1.0 Using cached dynesty-2.1.1-py2.py3-none-any.whl (106 kB) Collecting astroquery Using cached astroquery-0.4.6-py3-none-any.whl (4.5 MB) Collecting svo-filters Using cached svo_filters-0.4.4-py2.py3-none-any.whl (1.4 MB) Collecting exotic-ld Using cached exotic_ld-3.0.0-py3-none-any.whl Collecting tqdm Using cached tqdm-4.65.0-py3-none-any.whl (77 kB) Collecting lmfit Using cached lmfit-1.2.0-py3-none-any.whl (93 kB) Collecting stcal>=1.0.0 Using cached stcal-1.3.5-py3-none-any.whl (83 kB) Collecting asdf Using cached asdf-2.15.0-py3-none-any.whl (431 kB) Collecting jwst==1.8.2 Using cached jwst-1.8.2-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.0 MB) Collecting requests>=2.22 Using cached requests-2.28.2-py3-none-any.whl (62 kB) Collecting drizzle>=1.13.6 Using cached drizzle-1.13.7-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (298 kB) Collecting wiimatch>=0.2.1 Using cached wiimatch-0.3.1-py3-none-any.whl (17 kB) Collecting asdf-astropy>=0.2.2 Using cached asdf_astropy-0.4.0-py3-none-any.whl (73 kB) Collecting stpipe<1.0,>=0.4.2 Using cached stpipe-0.4.6-py3-none-any.whl (81 kB) Collecting BayesicFitting>=3.0.1 Using cached BayesicFitting-3.1.1-py3-none-any.whl (5.6 MB) Collecting poppy>=1.0.2 Using cached poppy-1.0.3-py3-none-any.whl (2.8 MB) Collecting stcal>=1.0.0 Using cached stcal-1.2.2-py3-none-any.whl (81 kB) Collecting stdatamodels Using cached stdatamodels-0.4.5-py3-none-any.whl (35 kB) Collecting stsci.imagestats>=1.6.3 Using cached stsci.imagestats-1.6.3-cp39-cp39-linux_x86_64.whl Collecting tweakwcs>=0.8.0 Using cached tweakwcs-0.8.2-py3-none-any.whl (83 kB) Collecting stsci.image>=2.3.5 Using cached stsci.image-2.3.5-cp39-cp39-linux_x86_64.whl Collecting spherical-geometry>=1.2.22 Using cached spherical_geometry-1.2.23-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (946 kB) Collecting scikit-image>=0.17.2 Using cached scikit_image-0.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.2 MB) Collecting certifi==2022.5.18.1 Using cached certifi-2022.5.18.1-py3-none-any.whl (155 kB) Collecting pyparsing>=2.2.1 Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Collecting psutil>=5.7.2 Using cached psutil-5.9.5-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (282 kB) Requirement already satisfied: packaging>=19 in /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/site-packages (from asdf->eureka==0.9) (23.1) Collecting importlib-metadata>=4.11.4 Using cached importlib_metadata-6.5.0-py3-none-any.whl (22 kB) Collecting pyyaml>=5.4.1 Using cached PyYAML-6.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (661 kB) Collecting semantic-version>=2.8 Using cached semantic_version-2.10.0-py2.py3-none-any.whl (15 kB) Collecting asdf-transform-schemas>=0.3 Using cached asdf_transform_schemas-0.3.0-py3-none-any.whl (195 kB) Collecting asdf-standard>=1.0.1 Using cached asdf_standard-1.0.3-py3-none-any.whl (71 kB) Collecting jmespath>=0.6.2 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Collecting asdf-unit-schemas>=0.1 Using cached asdf_unit_schemas-0.1.0-py3-none-any.whl (11 kB) Collecting pyerfa>=2.0 Using cached pyerfa-2.0.0.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (741 kB) Collecting pillow>=7.1.0 Using cached Pillow-9.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) Requirement already satisfied: typing-extensions>=3.10.0 in /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/site-packages (from bokeh<3.0->eureka==0.9) (4.5.0) Collecting Jinja2>=2.9 Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) Collecting tornado>=5.1 Using cached tornado-6.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (426 kB) Collecting filelock Using cached filelock-3.12.0-py3-none-any.whl (10 kB) Collecting parsley Using cached Parsley-1.3-py2.py3-none-any.whl (88 kB) Collecting partd>=0.3.10 Using cached partd-1.4.0-py3-none-any.whl (18 kB) Collecting toolz>=0.8.2 Using cached toolz-0.12.0-py3-none-any.whl (55 kB) Collecting cloudpickle>=1.1.1 Using cached cloudpickle-2.2.1-py3-none-any.whl (25 kB) Collecting fsspec>=0.6.0 Using cached fsspec-2023.4.0-py3-none-any.whl (153 kB) Collecting asdf-wcs-schemas Using cached asdf_wcs_schemas-0.1.1-py3-none-any.whl Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 Using cached pyrsistent-0.19.3-py3-none-any.whl (57 kB) Collecting attrs>=17.4.0 Using cached attrs-23.1.0-py3-none-any.whl (61 kB) Collecting h5netcdf Using cached h5netcdf-1.1.0-py2.py3-none-any.whl (26 kB) Collecting bottleneck Using cached Bottleneck-1.3.7-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (353 kB) Collecting netCDF4 Using cached netCDF4-1.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.2 MB) Collecting xarray Using cached xarray-2023.4.1-py3-none-any.whl (977 kB) Collecting beautifulsoup4>=4.3.2 Using cached beautifulsoup4-4.12.2-py3-none-any.whl (142 kB) Collecting keyring>=4.0 Using cached keyring-23.13.1-py3-none-any.whl (37 kB) Collecting pyvo>=1.1 Using cached pyvo-1.4.1-py3-none-any.whl (887 kB) Collecting html5lib>=0.999 Using cached html5lib-1.1-py2.py3-none-any.whl (112 kB) Collecting astroscrappy>=1.0.8 Using cached astroscrappy-1.1.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.3 MB) Collecting reproject>=0.7 Using cached reproject-0.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.5 MB) Collecting kiwisolver>=1.0.1 Using cached kiwisolver-1.4.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) Collecting contourpy>=1.0.1 Using cached contourpy-1.0.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB) Collecting importlib-resources>=3.2.0 Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) Collecting cycler>=0.10 Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting fonttools>=4.22.0 Using cached fonttools-4.39.3-py3-none-any.whl (1.0 MB) Collecting python-dateutil>=2.7 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting asteval>=0.9.28 Using cached asteval-0.9.29-py3-none-any.whl (18 kB) Collecting uncertainties>=3.1.4 Using cached uncertainties-3.1.7-py2.py3-none-any.whl (98 kB) Collecting pytz>=2020.1 Using cached pytz-2023.3-py2.py3-none-any.whl (502 kB) Collecting tzdata>=2022.1 Using cached tzdata-2023.3-py2.py3-none-any.whl (341 kB) Requirement already satisfied: tomli>=1.0.0 in /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/site-packages (from setuptools-scm->eureka==0.9) (2.0.1) Requirement already satisfied: setuptools in /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/site-packages (from setuptools-scm->eureka==0.9) (66.0.0) Collecting pytest Using cached pytest-7.3.1-py3-none-any.whl (320 kB) Collecting pysynphot Using cached pysynphot-2.0.0-cp39-cp39-linux_x86_64.whl Collecting numpydoc Using cached numpydoc-1.5.0-py3-none-any.whl (52 kB) Collecting ipython Using cached ipython-8.12.0-py3-none-any.whl (796 kB) Collecting asdf-coordinates-schemas>=0.1 Using cached asdf_coordinates_schemas-0.2.0-py3-none-any.whl (19 kB) Collecting future Using cached future-0.18.3-py3-none-any.whl Collecting soupsieve>1.2 Using cached soupsieve-2.4.1-py3-none-any.whl (36 kB) Collecting six>=1.9 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting webencodings Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting zipp>=0.5 Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) Collecting MarkupSafe>=2.0 Using cached MarkupSafe-2.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting jeepney>=0.4.2 Using cached jeepney-0.8.0-py3-none-any.whl (48 kB) Collecting SecretStorage>=3.2 Using cached SecretStorage-3.3.3-py3-none-any.whl (15 kB) Collecting jaraco.classes Using cached jaraco.classes-3.2.3-py3-none-any.whl (6.0 kB) Collecting locket Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Collecting astropy-healpix>=0.6 Using cached astropy_healpix-0.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (197 kB) Collecting idna<4,>=2.5 Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting charset-normalizer<4,>=2 Using cached charset_normalizer-3.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) Collecting urllib3<1.27,>=1.21.1 Using cached urllib3-1.26.15-py2.py3-none-any.whl (140 kB) Collecting scipy>=1.4.0 Using cached scipy-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.9 MB) Collecting lazy_loader>=0.1 Using cached lazy_loader-0.2-py3-none-any.whl (8.6 kB) Collecting tifffile>=2019.7.26 Using cached tifffile-2023.4.12-py3-none-any.whl (219 kB) Collecting networkx>=2.8 Using cached networkx-3.1-py3-none-any.whl (2.1 MB) Collecting imageio>=2.4.1 Using cached imageio-2.27.0-py3-none-any.whl (3.4 MB) Collecting PyWavelets>=1.1.1 Using cached PyWavelets-1.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.9 MB) Collecting stsci.stimage Using cached stsci.stimage-0.2.6-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (163 kB) Collecting traitlets>=5 Using cached traitlets-5.9.0-py3-none-any.whl (117 kB) Collecting pickleshare Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting jedi>=0.16 Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) Collecting pexpect>4.3 Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB) Collecting matplotlib-inline Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting backcall Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting stack-data Using cached stack_data-0.6.2-py3-none-any.whl (24 kB) Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 Using cached prompt_toolkit-3.0.38-py3-none-any.whl (385 kB) Collecting pygments>=2.4.0 Using cached Pygments-2.15.1-py3-none-any.whl (1.1 MB) Collecting decorator Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting cftime Using cached cftime-1.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) Collecting sphinx>=4.2 Using cached sphinx-6.1.3-py3-none-any.whl (3.0 MB) Collecting iniconfig Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Collecting exceptiongroup>=1.0.0rc8 Using cached exceptiongroup-1.1.1-py3-none-any.whl (14 kB) Collecting pluggy<2.0,>=0.12 Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB) Collecting parso<0.9.0,>=0.8.0 Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) Collecting ptyprocess>=0.5 Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting wcwidth Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB) Collecting cryptography>=2.0 Using cached cryptography-40.0.2-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.7 MB) Collecting sphinxcontrib-htmlhelp>=2.0.0 Using cached sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl (99 kB) Collecting sphinxcontrib-serializinghtml>=1.1.5 Using cached sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Collecting sphinxcontrib-devhelp Using cached sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting docutils<0.20,>=0.18 Using cached docutils-0.19-py3-none-any.whl (570 kB) Collecting sphinxcontrib-applehelp Using cached sphinxcontrib_applehelp-1.0.4-py3-none-any.whl (120 kB) Collecting alabaster<0.8,>=0.7 Using cached alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting sphinxcontrib-qthelp Using cached sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting snowballstemmer>=2.0 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting sphinxcontrib-jsmath Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting imagesize>=1.3 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting babel>=2.9 Using cached Babel-2.12.1-py3-none-any.whl (10.1 MB) Collecting more-itertools Using cached more_itertools-9.1.0-py3-none-any.whl (54 kB) Collecting pure-eval Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) Collecting executing>=1.2.0 Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB) Collecting asttokens>=2.1.0 Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB) Collecting cffi>=1.12 Using cached cffi-1.15.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (441 kB) Collecting pycparser Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) Building wheels for collected packages: astraeus, eureka Building wheel for astraeus (pyproject.toml) ... done Created wheel for astraeus: filename=Astraeus-0.3-py3-none-any.whl size=6634 sha256=3596b9d718e298dfae7665b21f585b39650de283d4551b17cf6137a8778daaa7 Stored in directory: /tmp/pip-ephem-wheel-cache-jzc3ndbs/wheels/5a/d6/c3/6414a9e1e1e4184e28601c312ba96ebda3b034f0c61bb5e7bc Building editable for eureka (pyproject.toml) ... error error: subprocess-exited-with-error

× Building editable for eureka (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [102 lines of output] /tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running editablewheel creating /tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka.egg-info writing /tmp/pip-wheel-ba1a4lw_/.tmp-b3253gjf/eureka.egg-info/PKG-INFO writing dependencylinks to /tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka.egg-info/dependencylinks.txt writing requirements to /tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka.egg-info/requires.txt writing top-level names to /tmp/pip-wheel-ba1a4lw_/.tmp-b3253gjf/eureka.egg-info/toplevel.txt writing manifest file '/tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file '/tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka.egg-info/SOURCES.txt' creating '/tmp/pip-wheel-ba1a4lw/.tmp-b3253gjf/eureka-0.9.dist-info' creating /tmp/pip-wheel-ba1a4lw_/.tmp-b3253gjf/eureka-0.9.dist-info/WHEEL running build_py running build_ext building 'eureka.S3_data_reduction.niriss_cython' extension creating /tmp/tmpocjuel6a.build-temp/src creating /tmp/tmpocjuel6a.build-temp/src/eureka creating /tmp/tmpocjuel6a.build-temp/src/eureka/S3_data_reduction gcc -pthread -B /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/include -I/home/ec2-user/efs-mount-point/anaconda3/envs/eureka/include -fPIC -O2 -isystem /home/ec2-user/efs-mount-point/anaconda3/envs/eureka/include -fPIC -I/home/ec2-user/efs-mount-point/anaconda3/envs/eureka/include/python3.9 -c src/eureka/S3_data_reduction/niriss_cython.c -o /tmp/tmpocjuel6a.build-temp/src/eureka/S3_data_reduction/niriss_cython.o Traceback (most recent call last): File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/spawn.py", line 57, in spawn proc = subprocess.Popen(cmd, env=env) File "/home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/subprocess.py", line 951, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/home/ec2-user/efs-mount-point/anaconda3/envs/eureka/lib/python3.9/subprocess.py", line 1821, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'gcc'

  The above exception was the direct cause of the following exception:

  Traceback (most recent call last):
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/unixccompiler.py", line 185, in _compile
      self.spawn(compiler_so + cc_args + [src, '-o', obj] + extra_postargs)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/ccompiler.py", line 1041, in spawn
      spawn(cmd, dry_run=self.dry_run, **kwargs)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/spawn.py", line 63, in spawn
      raise DistutilsExecError(
  distutils.errors.DistutilsExecError: command 'gcc' failed: No such file or directory

  During handling of the above exception, another exception occurred:

  Traceback (most recent call last):
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/editable_wheel.py", line 147, in run
      self._create_wheel_file(bdist_wheel)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/editable_wheel.py", line 328, in _create_wheel_file
      files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/editable_wheel.py", line 259, in _run_build_commands
      self._run_build_subcommands()
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/editable_wheel.py", line 286, in _run_build_subcommands
      self.run_command(name)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1221, in run_command
      super().run_command(command)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 84, in run
      _build_ext.run(self)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
      self.build_extensions()
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
      self._build_extensions_serial()
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
      self.build_extension(ext)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 246, in build_extension
      _build_ext.build_extension(self, ext)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 548, in build_extension
      objects = self.compiler.compile(
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/ccompiler.py", line 600, in compile
      self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
    File "/tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/_distutils/unixccompiler.py", line 187, in _compile
      raise CompileError(msg)
  distutils.errors.CompileError: command 'gcc' failed: No such file or directory
  /tmp/pip-build-env-l0k669of/overlay/lib/python3.9/site-packages/setuptools/command/editable_wheel.py:151: _DebuggingTips: An error happened while installing 'eureka' in editable mode.

          ************************************************************************
          The following steps are recommended to help debugging this problem:

          - Try to install the project normally, without using the editable mode.
            Does the error still persists?
            (If it does, try fixing the problem before attempting the editable mode).
          - If you are using binary extensions, make sure you have all OS-level
            dependencies installed (e.g. compilers, toolchains, binary libraries, ...).
          - Try the latest version of setuptools (maybe the error was already fixed).
          - If you (or your project dependencies) are using any setuptools extension
            or customization, make sure they support the editable mode.

          After following the steps above, if the problem still persist and
          you think this is related to how setuptools handles editable installations,
          please submit a reproducible example
          (see https://stackoverflow.com/help/minimal-reproducible-example) to:

              https://github.com/pypa/setuptools/issues

          More information about editable installs can be found in the docs:

              https://setuptools.pypa.io/en/latest/userguide/development_mode.html
          ************************************************************************

    _DebuggingTips.warn(project)
  error: command 'gcc' failed: No such file or directory
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building editable for eureka Successfully built astraeus Failed to build eureka ERROR: Could not build wheels for eureka, which is required to install pyproject.toml-based projects

What operating system are you using?

Amazon Linux 2

What version of Python are you running?

Python 3.9.7

What Python packages do you have installed?

Code of Conduct

[X] I agree to follow this project's Code of Conduct

kevin218 / Eureka

Having a problem with v0.9 installation. #523