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kevin218 / Eureka

Eureka! is a data reduction and analysis pipeline intended for time-series observations with JWST.
https://eurekadocs.readthedocs.io/
MIT License
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Generating light curves at 1-pixel resolution with NIRSpec G395H data #606

Closed sarthakpatel7 closed 5 months ago

sarthakpatel7 commented 5 months ago

Instrument

Light curve fitting (Stages 4-6)

What happened?

I want to generate a light curve for each pixel in the data of NIRSpec G395H. However, in the output of Stage 4 I end up with some blank plots. The blank plots show wavelength band show, e.g., 4.601 - 4.601. Is delta lambda being 0.001 a limitation here (i.e. is it needed that delta lambda should be greater than 0.001) or it shouldn't be a problem? fig4102_ch001_1D_LC

Error traceback output

No response

What operating system are you using?

Linux

What version of Python are you running?

Python 3.9

What Python packages do you have installed?

Name Version Build Channel

_libgcc_mutex 0.1 main
_openmp_mutex 5.1 1_gnu
alabaster 0.7.13 pypi_0 pypi asdf 2.15.0 pypi_0 pypi asdf-astropy 0.4.0 pypi_0 pypi asdf-coordinates-schemas 0.2.0 pypi_0 pypi asdf-standard 1.0.3 pypi_0 pypi asdf-transform-schemas 0.3.0 pypi_0 pypi asdf-unit-schemas 0.1.0 pypi_0 pypi asdf-wcs-schemas 0.1.1 pypi_0 pypi asteval 0.9.29 pypi_0 pypi astraeus 0.3 pypi_0 pypi astropy 5.2.2 pypi_0 pypi astropy-healpix 0.7 pypi_0 pypi astroquery 0.4.6 pypi_0 pypi astroscrappy 1.1.0 pypi_0 pypi asttokens 2.2.1 pypi_0 pypi attrs 23.1.0 pypi_0 pypi babel 2.12.1 pypi_0 pypi backcall 0.2.0 pypi_0 pypi batman-package 2.4.9 pypi_0 pypi bayesicfitting 3.1.1 pypi_0 pypi beautifulsoup4 4.12.2 pypi_0 pypi bokeh 2.4.3 pypi_0 pypi bottleneck 1.3.7 pypi_0 pypi ca-certificates 2023.01.10 h06a4308_0
ccdproc 2.4.0 pypi_0 pypi celerite 0.4.2 pypi_0 pypi certifi 2022.5.18.1 pypi_0 pypi cffi 1.15.1 pypi_0 pypi cftime 1.6.2 pypi_0 pypi charset-normalizer 3.1.0 pypi_0 pypi cloudpickle 2.2.1 pypi_0 pypi contourpy 1.0.7 pypi_0 pypi corner 2.2.2 pypi_0 pypi crds 11.17.0 pypi_0 pypi cryptography 40.0.2 pypi_0 pypi cycler 0.11.0 pypi_0 pypi cython 0.29.34 pypi_0 pypi dask 2022.6.0 pypi_0 pypi decorator 5.1.1 pypi_0 pypi docutils 0.20 pypi_0 pypi drizzle 1.13.7 pypi_0 pypi dynesty 2.1.1 pypi_0 pypi emcee 3.1.4 pypi_0 pypi eureka 0.11.dev35+gfb357182 pypi_0 pypi exceptiongroup 1.1.1 pypi_0 pypi executing 1.2.0 pypi_0 pypi exotic-ld 3.0.0 pypi_0 pypi filelock 3.12.0 pypi_0 pypi fonttools 4.39.4 pypi_0 pypi fsspec 2023.5.0 pypi_0 pypi future 0.18.3 pypi_0 pypi george 0.4.0 pypi_0 pypi gwcs 0.18.3 pypi_0 pypi h5netcdf 1.1.0 pypi_0 pypi h5py 3.1.0 pypi_0 pypi html5lib 1.1 pypi_0 pypi idna 3.4 pypi_0 pypi imageio 2.28.1 pypi_0 pypi imagesize 1.4.1 pypi_0 pypi importlib-metadata 6.6.0 pypi_0 pypi importlib-resources 5.12.0 pypi_0 pypi iniconfig 2.0.0 pypi_0 pypi ipython 8.13.2 pypi_0 pypi jaraco-classes 3.2.3 pypi_0 pypi jedi 0.18.2 pypi_0 pypi jeepney 0.8.0 pypi_0 pypi jinja2 3.1.2 pypi_0 pypi jmespath 1.0.1 pypi_0 pypi jsonschema 4.9.1 pypi_0 pypi jwst 1.11.4 pypi_0 pypi keyring 23.13.1 pypi_0 pypi kiwisolver 1.4.4 pypi_0 pypi lazy-loader 0.2 pypi_0 pypi ld_impl_linux-64 2.38 h1181459_1
libffi 3.3 he6710b0_2
libgcc-ng 11.2.0 h1234567_1
libgomp 11.2.0 h1234567_1
libstdcxx-ng 11.2.0 h1234567_1
lmfit 1.2.1 pypi_0 pypi locket 1.0.0 pypi_0 pypi markupsafe 2.1.2 pypi_0 pypi matplotlib 3.7.1 pypi_0 pypi matplotlib-inline 0.1.6 pypi_0 pypi more-itertools 9.1.0 pypi_0 pypi ncurses 6.4 h6a678d5_0
netcdf4 1.6.3 pypi_0 pypi networkx 3.1 pypi_0 pypi numpy 1.22.0 pypi_0 pypi numpydoc 1.5.0 pypi_0 pypi opencv-python-headless 4.8.1.78 pypi_0 pypi openssl 1.1.1t h7f8727e_0
packaging 23.1 pypi_0 pypi pandas 2.0.1 pypi_0 pypi parsley 1.3 pypi_0 pypi parso 0.8.3 pypi_0 pypi partd 1.4.0 pypi_0 pypi pexpect 4.8.0 pypi_0 pypi photutils 1.7.0 pypi_0 pypi pickleshare 0.7.5 pypi_0 pypi pillow 9.5.0 pypi_0 pypi pip 23.0.1 py39h06a4308_0
pluggy 1.0.0 pypi_0 pypi poppy 1.1.0 pypi_0 pypi prompt-toolkit 3.0.38 pypi_0 pypi psutil 5.9.5 pypi_0 pypi ptyprocess 0.7.0 pypi_0 pypi pure-eval 0.2.2 pypi_0 pypi pycparser 2.21 pypi_0 pypi pyerfa 2.0.0.3 pypi_0 pypi pygments 2.15.1 pypi_0 pypi pyparsing 3.0.9 pypi_0 pypi pyrsistent 0.19.3 pypi_0 pypi pysynphot 2.0.0 pypi_0 pypi pytest 7.3.1 pypi_0 pypi python 3.9.7 h12debd9_1
python-dateutil 2.8.2 pypi_0 pypi pytz 2023.3 pypi_0 pypi pyvo 1.4.1 pypi_0 pypi pywavelets 1.4.1 pypi_0 pypi pyyaml 6.0 pypi_0 pypi readline 8.2 h5eee18b_0
reproject 0.10.0 pypi_0 pypi requests 2.30.0 pypi_0 pypi scikit-image 0.20.0 pypi_0 pypi scipy 1.9.1 pypi_0 pypi secretstorage 3.3.3 pypi_0 pypi semantic-version 2.10.0 pypi_0 pypi setuptools 66.0.0 py39h06a4308_0
setuptools-scm 7.1.0 pypi_0 pypi six 1.16.0 pypi_0 pypi snowballstemmer 2.2.0 pypi_0 pypi soupsieve 2.4.1 pypi_0 pypi spherical-geometry 1.2.23 pypi_0 pypi sphinx 7.0.1 pypi_0 pypi sphinxcontrib-applehelp 1.0.4 pypi_0 pypi sphinxcontrib-devhelp 1.0.2 pypi_0 pypi sphinxcontrib-htmlhelp 2.0.1 pypi_0 pypi sphinxcontrib-jsmath 1.0.1 pypi_0 pypi sphinxcontrib-qthelp 1.0.3 pypi_0 pypi sphinxcontrib-serializinghtml 1.1.5 pypi_0 pypi sqlite 3.41.2 h5eee18b_0
stack-data 0.6.2 pypi_0 pypi stcal 1.4.4 pypi_0 pypi stdatamodels 1.7.2 pypi_0 pypi stpipe 0.5.0 pypi_0 pypi stsci-image 2.3.5 pypi_0 pypi stsci-imagestats 1.6.3 pypi_0 pypi stsci-stimage 0.2.6 pypi_0 pypi svo-filters 0.4.4 pypi_0 pypi tifffile 2023.4.12 pypi_0 pypi tk 8.6.12 h1ccaba5_0
tomli 2.0.1 pypi_0 pypi toolz 0.12.0 pypi_0 pypi tornado 6.3.2 pypi_0 pypi tqdm 4.65.0 pypi_0 pypi traitlets 5.9.0 pypi_0 pypi tweakwcs 0.8.2 pypi_0 pypi typing-extensions 4.5.0 pypi_0 pypi tzdata 2023.3 pypi_0 pypi uncertainties 3.1.7 pypi_0 pypi urllib3 2.0.2 pypi_0 pypi wcwidth 0.2.6 pypi_0 pypi webencodings 0.5.1 pypi_0 pypi wheel 0.38.4 py39h06a4308_0
wiimatch 0.3.1 pypi_0 pypi xarray 2023.4.2 pypi_0 pypi xz 5.4.2 h5eee18b_0
zipp 3.15.0 pypi_0 pypi zlib 1.2.13 h5eee18b_0

Code of Conduct

taylorbell57 commented 5 months ago

As is documented on our Read the Docs page here, to nspecchan should be set to None to leave the spectrum unbinned. Please let me know whether this resolves your issue

sarthakpatel7 commented 5 months ago

As is documented on our Read the Docs page here, to nspecchan should be set to None to leave the spectrum unbinned. Please let me know whether this resolves your issue

Yes, doing this seems to have resolved the issue.