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kevinblighe / E-MTAB-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
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logCPM #2

Closed lmanchon closed 2 years ago

lmanchon commented 2 years ago

--Hi, is your mat.tsv table normalized such as logCPM ? thank you --

kevinblighe commented 2 years ago

Hi @lmanchon, the mat.tsv represents regularised log expression levels, produced via DESeq2. These are further scaled in section 4 (a) of the tutorial. Apologies for not mentioning this.