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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Cannot install "kevinblighe/EnhancedVolcano" #25

Closed jahneldardavik closed 5 years ago

jahneldardavik commented 5 years ago

Dear Kevin, I have just discovered this package and wanted to have look at it. However, I immediately encounter a hurdle that I cannot figure out. When I do: devtools::install_github("kevinblighe/EnhancedVolcano"), I get the following return: Downloading GitHub repo kevinblighe/EnhancedVolcano@master √ checking for file 'C:\Users\jada\AppData\Local\Temp\RtmpktRGsc\remotes10b0795d3486\kevinblighe-EnhancedVolcano-b7aab27/DESCRIPTION' ...

Hope you are able to advice me. Thank you. Jahn

kevinblighe commented 5 years ago

Hey Jahn,

I am not entirely sure what is happening there... I just installed it correctly on my computer using 

devtools::install_github("kevinblighe/EnhancedVolcano")

...however, I am using R 3.6.1.

The version of EnhancedVolcano that are you are trying to install from GitHub was developed on my current computer under R 3.6.1, so, I think that, if you upgrade to R 3.6.1, then it will work correctly.

Sorry, I know that it can be annoying to update the version of R... try to think of it as a 'Spring Clean'!

Kevin

jahneldardavik commented 5 years ago

Hi, If I do not run the devtools thing and only do “ if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("EnhancedVolcano") library(EnhancedVolcano) “

it appears to work just fine.

Thanks jahn Fra: Kevin Blighe [mailto:notifications@github.com] Sendt: 5. oktober 2019 01:39 Til: kevinblighe/EnhancedVolcano EnhancedVolcano@noreply.github.com Kopi: Jahn Davik jahn.davik@nibio.no; Author author@noreply.github.com Emne: Re: [kevinblighe/EnhancedVolcano] Cannot install "kevinblighe/EnhancedVolcano" (#25)

Hey Jahn,

I am not entirely sure what is happening there... I just installed it correctly on my computer using

devtools::install_github("kevinblighe/EnhancedVolcano")

...however, I am using R 3.6.1.

The version of EnhancedVolcano that are you are trying to install from GitHub was developed on my current computer under R 3.6.1, so, I think that, if you upgrade to £R 3.6.1, then it will work correctly.

Sorry, I know that it can be annoying to update the version of R... try to think of it as a 'Spring Clean'!

Kevin

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/kevinblighe/EnhancedVolcano/issues/25?email_source=notifications&email_token=AGESAZXTYSGE7CN4WLEFDJ3QM7HYHA5CNFSM4I4VRN4KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEANEJUI#issuecomment-538592465, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AGESAZW2UBFXNT2YSTOOVVTQM7HYHANCNFSM4I4VRN4A.

kevinblighe commented 5 years ago

Thank you; however, that may not be installing the most updated version (?). Not to worry, can you confirm that you are now content with everything?

jahneldardavik commented 5 years ago

Appears good with me. May have some newbie questions in due time. That said, your tutorial is great. Thank you.

jahn

Fra: Kevin Blighe [mailto:notifications@github.com] Sendt: 5. oktober 2019 19:41 Til: kevinblighe/EnhancedVolcano EnhancedVolcano@noreply.github.com Kopi: Jahn Davik jahn.davik@nibio.no; Author author@noreply.github.com Emne: Re: [kevinblighe/EnhancedVolcano] Cannot install "kevinblighe/EnhancedVolcano" (#25)

Thank you; however, that may not be installing the most updated version (?). Not to worry, can you confirm that you are now content with everything?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/kevinblighe/EnhancedVolcano/issues/25?email_source=notifications&email_token=AGESAZVIUUTZKXNIUERRRTLQNDGTLA5CNFSM4I4VRN4KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEANXXHQ#issuecomment-538672030, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AGESAZU3PW57YPTFM52BUHTQNDGTLANCNFSM4I4VRN4A.

kevinblighe commented 5 years ago

Okay, sure thing! You can post the questions on Biostars, too: https://www.biostars.org/t/Open/

Kind regards, Kevin

dlinsen1 commented 4 years ago

I am having the same issue, but restart does not solve it. is it Rstudio? something else?