Closed eoinmck closed 4 years ago
kevinblighe
commented
4 years ago Hey, sorry about that. You are using an old version of the package. I decided to change some of the parameter names in the last release, a few months ago. For your version, I think that transcriptPointSize will work.
eoinmck
commented
4 years ago Many thanks Kevin - that worked without problems.
Thanks again for your work on the package and best wishes
On 28 Mar 2020, at 17:00, Kevin Blighe notifications@github.com<mailto:notifications@github.com> wrote:
Hey, sorry about that. You are using an old version of the package. I decided to change some of the parameter names in the last release, a few months ago. For your version, I think that transcriptPointSize will work.
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Dear Kevin,
Firstly, many thanks for a great package. I've been experiencing an issue similar to that noted by others, namely that the pointSize, labSize and boxedLabels options result in an 'unused argument' error:
p1 <- EnhancedVolcano(p, lab = rownames(p), x = 'log2FC', y = 'padj', xlim = c(-2,2.5), ylim = c(0,3), pointSize = 4)
Error in EnhancedVolcano(lab = p$labs, x = "log2FC", y = "padj", xlim = c(-2, : unused argument (pointSize = 4)
I noticed that previous errors were related to outdated versions of either the package or R, but I don't think that is the issue here (I've installed the latest version from Github, rather than via Bioconductor):
platform x86_64-redhat-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 6.0
year 2019
month 04
day 26
svn rev 76424
language R
version.string R version 3.6.0 (2019-04-26)
I'd be grateful for any suggestions on what might be tripping the options up.
Many thanks again for a great package and best wishes