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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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error with ggplotly #40

Closed ghost closed 4 years ago

ghost commented 4 years ago

Hi

I am trying to use enhanced volcano on shiny but i get this error:

p <- EnhancedVolcano(gene_diff, lab = gene_diff$symbol, x = 'logfc', y = 'pval') class(p) [1] "gg" "ggplot" p %>% ggplotly(tooltip = "tooltip") Error in unique.default(x) : unique() applies only to vectors In addition: Warning messages: 1: In if (nchar(axisTitleText) > 0) { : the condition has length > 1 and only the first element will be used 2: In if (nchar(axisTitleText) > 0) { : the condition has length > 1 and only the first element will be used

i can see the plot in R studio but not when trying to visualize it in shiny.

Thank you.

kevinblighe commented 4 years ago

Hey, can you try the new version that has just been released with R v4.0.0 and Bioconductor 3.11?

kevinblighe commented 4 years ago

Got this working? I have never yet checked how the package functions in R Shiny...

kevinblighe commented 4 years ago

No response