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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Volcano plot it's produced but wihout any labels #63

Closed matrs closed 3 years ago

matrs commented 3 years ago

Hello, thanks for this package, seems to be very useful. I tried the demo code from the vignette and It worked as expected. The problem that I'm having is with a small dataset (I'm attaching it). I can produce a volcano plot but I don't why the labels aren't displayed in the plot. I tried multiple other arguments, but I really don't understand why the labels aren't part of the plot, it should be very straightforward to do it: 

volc_plot <- EnhancedVolcano(protlist_qvals, lab = "labels", x = "FC in CoCl2", 
                             y ="N: Student's T-test q-value CoCl2_CTR", 
                             xlim = c(-0.4,5),
                             title = "CoCl2")

volc_cocl2

Here is small tab separated file to reproduce it (I changed the extension because github doesn't allow csv/tsv extensions).

enhancedVol_list.xlsx

kevinblighe commented 3 years ago

Please double-check the vignette. Your lab argument is incorrect