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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Color and label only genes of interest #76

Closed aditisk closed 3 years ago

aditisk commented 3 years ago

Hi @kevinblighe,

I have a question about how to color and label only some genes that I am interested in on the Volcano plot. These are not the top 100 genes hence a p-value or logFC cut-off won't work. Ideally I want 3 colors: non significant genes, significant but not in my list and genes in my list.

Any thoughts on if this is possible ? Thanks a lot for your help.

kevinblighe commented 3 years ago

Hi, you should be able to do this by following the example here: https://github.com/kevinblighe/EnhancedVolcano#over-ride-colour-andor-shape-scheme-with-custom-key-value-pairs

You may also need to make use of the selectLab parameter.

Can you try that? - thanks!

Kevin

aditisk commented 3 years ago

Hi @kevinblighe, thanks for the suggestion. I was able to get this to work.