kevinblighe PCAtools issues

kevinblighe / PCAtools

PCAtools: everything Principal Components Analysis

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The package fails checks on Bioconductor

#75 trinetra75 closed 3 months ago
4
Updates for the v3 tatami interface.

#74 LTLA opened 3 months ago
0
eigencoreplot error

#73 AnjaliS1 opened 7 months ago
1
FeatureRequest: continous color scale legend for `biplot`

#72 wbvguo opened 7 months ago
0
PCA function error, hi can you fix this function by adding useNames=F to the colVars function from the matrixStats package.

#71 elifozcelik opened 8 months ago
0
Error with the pca function

#70 Pierre9344 opened 9 months ago
3
Extend pca() arguments to allow specifying BPPARAM in the calls to BiocSingular

#69 trinetra75 opened 9 months ago
0
Use on voom-limma normalized data ?

#68 Krithika-Bhuvan opened 10 months ago
0
Obtaining the eigenvalues

#67 luizalmeida93 opened 11 months ago
0
problem creating pca object

#66 jawi005 opened 1 year ago
0
biplot error message

#65 renliang1996 opened 1 year ago
0
Migrate matrix shuffler to the new tatami C++ API.

#64 LTLA closed 10 months ago
0
Color of labels

#63 SebastianHesse opened 1 year ago
0
Warning: non-numeric variables will be coerced to numeric

#62 arunhpatil closed 1 year ago
1
biplot error message

#61 yussufhajjaj closed 1 year ago
1
Using stat_ellipse to indicate clustering results

#60 SebastianHesse closed 1 year ago
5
Shared legend

#59 lardenoije opened 2 years ago
0
Percentage variation

#58 VictorGoitea closed 2 years ago
1
Biplot connectors not drawn

#57 Izar-de-villasante closed 2 years ago
1
ggpairs plots legend for every subplot

#56 nikofleischer closed 2 years ago
2
eigencorplot throws an error when plotting only a single variable

#55 nikofleischer closed 2 years ago
1
Legend with Pairsplot

#54 hmraimeryoung-95 closed 2 years ago
1
tSNE tools

#53 Shicheng-Guo closed 2 years ago
2
Not able to showLoadings on biplot

#52 cejdan closed 2 years ago
3
Changing size of shape legend icons / symbols

#51 milcs40 closed 2 years ago
1
Support PCA methods for `base` based `pca`

#50 Nelson-Gon closed 2 years ago
2
PCAtools’ is not available (for R version 3.6.1)

#49 naz14 closed 2 years ago
7
ellipse circle is in parts

#48 aaqib-ux closed 2 years ago
2
can't hide ellipseline

#47 little2b closed 2 years ago
9
Use other metadata than "colby" for encircle

#46 SebastianHesse closed 2 years ago
2
Bug in pca function when inputting metadata

#45 GiantSpaceRobot closed 2 years ago
0
Revert "Make biplot an s3 method for the stats function"

#44 kevinblighe closed 3 years ago
0
add export biplot.pca to NAMESPACE

#43 andreagrioni closed 3 years ago
2
Fix s3 warnings introduced by #41

#42 alanocallaghan closed 2 years ago
0
Make biplot an s3 method for the stats function

#41 alanocallaghan closed 3 years ago
6
exporting results for interactive visualization?

#40 guidohooiveld closed 3 years ago
3
Setting scale=TRUE produced error from svd()

#39 chainorato closed 3 years ago
3
Minor typo in README

#38 RamRS closed 3 years ago
1
Ellipse function returning weird results

#37 luizalmeida93 closed 3 years ago
6
Any easy way to run PCAtools on Seurat Objects?

#36 mr-september closed 2 years ago
2
Adding a black border to plotted colored points

#35 parcbioinfo closed 3 years ago
2
Fixing variation when center=FALSE

#34 rpolicastro closed 3 years ago
8
biplot issue

#33 luis-martinez-robles closed 3 years ago
1
Fixing proportion of variance calculation when scale=FALSE

#32 rpolicastro closed 3 years ago
2
Biplot variance really high when center=FALSE for pca

#31 rpolicastro closed 3 years ago
0
difference between PCA with and witout metadata

#30 Manonanthini closed 3 years ago
1
biplot showLoadings argument not available

#29 FelixErnst closed 4 years ago
2
An eigencor plot?

#28 hamidghaedi closed 4 years ago
1
Error with ellipse feature

#27 amarinderthind closed 4 years ago
1
Cant draw elipses ("encircle" option missing in biplot)

#26 SebastianHesse closed 4 years ago
3