I'm having an issue with the contourPlot function. I'm using an sce generated in CATALYST containing 60 fcs files from a cytof run.
contourPlot(sce)
--input data class is SingleCellExperiment
Error in reducedDim(indata, reducedDim)[, dimColnames] :
no 'dimnames' attribute for array
When i look in the int_colData of the sce, the reducedDims are there and so are the two columns of data for the UMAP under listData, so am not sure what is going wrong?
I'm having an issue with the contourPlot function. I'm using an sce generated in CATALYST containing 60 fcs files from a cytof run. contourPlot(sce) --input data class is SingleCellExperiment Error in reducedDim(indata, reducedDim)[, dimColnames] : no 'dimnames' attribute for array
When i look in the int_colData of the sce, the reducedDims are there and so are the two columns of data for the UMAP under listData, so am not sure what is going wrong?