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kevinblighe / scDataviz

scDataviz: single cell dataviz and downstream analyses
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Feat/nrs plot utility #9

Closed JamesOpz closed 4 years ago

JamesOpz commented 4 years ago

Thus function calculates the Non Redundancy Score (nrs) (In supplemental methods from https://www.sciencedirect.com/science/article/pii/S0092867415006376for) for each marker from each sample. nrs is a simple feature scoring algorithm based on PCA to identify the non-redundant markers in each sample while capturing the overall diversity across the samples. The funtion generates a series of boxplots displaying the mean nrs score for each marker, where the plot is ordered by mean nrs socre for each marker from high to low. Can take a feature as input to split the boxplots further by an experimental condition. Output without feature: nrs_no_feature

Output with feature: nrs_with_feature

JamesOpz commented 4 years ago

Updated to work on the SingelCellExperiment Object