Number of scans incorrect

kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

Apache License 2.0

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Number of scans incorrect #11

Closed kevinkovalchik closed 5 years ago

kevinkovalchik commented 5 years ago

Describe the bug It has been noted a couple times that the number of scans we report differs from what RawMeat gives you. We also noticed a difference from QualBrowser.

Additional context It turns out a fix coming out of issue #2 resulted in all MS1 scans with no dependents getting dropped. This didn't impact the parse matrix output, but does affect some of the metrics. We are working to resolve this and will update here.

kevinkovalchik commented 5 years ago

v1.4.0-beta was just released, which should hopefully address this issue. It is a pre-release, so please let us know if you have any issues with it and we will try to sort them out.