search

kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
Apache License 2.0
64 stars 19 forks source link

RawTools GUI does not create parse matrix when using quan option #34

Open CKFF opened 5 years ago

CKFF commented 5 years ago

Describe the bug I tried to create the parse matrix file including reporter ion quantification (TMT10x). It works well using the command line, but doesn't work with the GUI-beta. No file is created.

Description of raw file m02846.raw from PXD002875

Command line arguments RawToolsGUI-beta. In the logfile

Command line output

Screenshots system summary.txt rawtools_log_parseMatrix_TMT10.txt screenshot

Desktop & RawTools information:

Additional context using the same raw file as input: create mgf: OK create parse matrix: OK create mgf + parse matrix: OK create mgf + parse matrix + TMT10 Quantification: fails create parse matrix + TMT 10 Quantification: fails

kevinkovalchik commented 5 years ago

Thanks for bringing up the issue. I'm pretty sure this is a problem that came up and was fixed in the CLI version recently. I'm planning to merge the two in the next release, so it should be fixed soon.

Let me know if you prefer to use the GUI and I will see about uploading a fixed version to the GUI-beta before the next release.