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kevinmcgregor / mdine

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Network differences #10

Open YAYA530 opened 2 years ago

YAYA530 commented 2 years ago

Hi Kevin.

I found the code in GitHub only tell us how to plot a network for each group plot_networks (obj). Is there any code for plotting the differential Network between case and control samples (like figure 5 in your paper)? And I found the command [sig_diff_prec.Rd], is it for finding the significantly different correlation between case and control groups? What about the weight for the differential network?

kevinmcgregor commented 2 years ago

Yes there is: check out https://github.com/kevinmcgregor/crohns_analysis for how to make the figures from the paper.

Assume your mdine object is md.fit

Estimated differences in weights are in md.fit$post_mean$invsigma_diff

Credible intervals for differences in correlation are found in md.fit$ci$invsigma_diff . These can be used to determine significance.