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kevinmcgregor / mdine

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compilation failed for package ‘mdine’ #14

Open marcinschmidt opened 11 months ago

marcinschmidt commented 11 months ago

Hi! I can't install your package

> devtools::install_github("kevinmcgregor/mdine", dependencies=TRUE)
Downloading GitHub repo kevinmcgregor/mdine@HEAD
── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file ‘/private/var/folders/sw/1w0vryd1707f6pqd056xgtk40000gn/T/RtmpVn3RFw/remotes302185fbd15/kevinmcgregor-mdine-654a9ed/DESCRIPTION’ ...
─  preparing ‘mdine’: (386ms)
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts (849ms)
─  checking for empty or unneeded directories
─  building ‘mdine_1.1.0.tar.gz’

* installing *source* package ‘mdine’ ...
** using staged installation
** libs

using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++14
using SDK: ‘’
"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mn_model.stan

Wrote C++ file "stan_files/mn_model.cc"

clang++ -arch x86_64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -O3 -mtune=native -arch x86_64 -ftemplate-depth-256 -c stan_files/mn_model.cc -o stan_files/mn_model.o

In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:1:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Core:540:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:2:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/LU:47:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Jacobi:29:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Cholesky:43:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/QR:15:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Householder:27:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/QR:48:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:5:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/SVD:48:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:6:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Geometry:58:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Dense:7:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Eigenvalues:58:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/SparseCore:66:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Sparse:27:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/OrderingMethods:71:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/SparseCholesky:43:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Sparse:32:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/SparseQR:34:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/Sparse:33:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:20:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/io/rlist_ref_var_context.hpp:201:19: error: no member named 'validate_dims' in namespace 'stan::io'
        stan::io::validate_dims(*this, stage, name, base_type, dims_declared);
        ~~~~~~~~~~^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/CholmodSupport:45:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from stan_files/mn_model.cc:3:
In file included from stan_files/mn_model.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/rstan/include/rstan/stan_fit.hpp:43:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim.hpp:10:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/core.hpp:4:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:12:10: fatal error: 'tbb/task_scheduler_init.h' file not found
#include <tbb/task_scheduler_init.h>
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
18 warnings and 2 errors generated.
rm stan_files/mn_model.cc
make: *** [stan_files/mn_model.o] Error 1
ERROR: compilation failed for package ‘mdine’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/mdine’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/sw/1w0vryd1707f6pqd056xgtk40000gn/T//RtmpVn3RFw/file3023576ba33/mdine_1.1.0.tar.gz’ had non-zero exit status

Can you help mi with that?

> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6.9

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/Warsaw
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rstan_2.26.23       StanHeaders_2.26.28

loaded via a namespace (and not attached):
 [1] gtable_0.3.4         ggplot2_3.4.3        QuickJSR_1.0.6       htmlwidgets_1.6.2    devtools_2.4.5       remotes_2.4.2.1     
 [7] processx_3.8.2       inline_0.3.19        callr_3.7.3          vctrs_0.6.3          tools_4.3.1          ps_1.7.5            
[13] generics_0.1.3       curl_5.0.2           stats4_4.3.1         parallel_4.3.1       tibble_3.2.1         fansi_1.0.4         
[19] pkgconfig_2.0.3      desc_1.4.2           RcppParallel_5.1.7   lifecycle_1.0.3      compiler_4.3.1       stringr_1.5.0       
[25] munsell_0.5.0        codetools_0.2-19     httpuv_1.6.11        htmltools_0.5.6      sys_3.4.2            usethis_2.2.2       
[31] pillar_1.9.0         later_1.3.1          crayon_1.5.2         urlchecker_1.0.1     ellipsis_0.3.2       cachem_1.0.8        
[37] sessioninfo_1.2.2    mime_0.12            macrtools_0.0.0.9000 tidyselect_1.2.0     digest_0.6.33        stringi_1.7.12      
[43] dplyr_1.1.3          purrr_1.0.2          rprojroot_2.0.3      fastmap_1.1.1        grid_4.3.1           colorspace_2.1-0    
[49] cli_3.6.1            magrittr_2.0.3       loo_2.6.0            pkgbuild_1.4.2       utf8_1.2.3           prettyunits_1.2.0   
[55] scales_1.2.1         promises_1.2.1       matrixStats_1.0.0    gridExtra_2.3        askpass_1.2.0        memoise_2.0.1       
[61] shiny_1.7.5          miniUI_0.1.1.1       profvis_0.3.8        rlang_1.1.1          Rcpp_1.0.11          xtable_1.8-4        
[67] glue_1.6.2           pkgload_1.3.3        rstudioapi_0.15.0    jsonlite_1.8.7       R6_2.5.1             fs_1.6.3
kevinmcgregor commented 11 months ago

It seems there are problems with using mdine with the newer versions of StanHeaders. Can you try using an older verison of RStan and see if it works? I have rstan version 2.21.8 and StanHeaders 2.21.0.7. You can do this using devtools::install_version().