`import` from GO annotations rather than `as` - Githubissues

kevinrue / unisets

Collection of classes to store gene sets.

http://kevinrue.github.io/unisets

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`import` from GO annotations rather than `as` #16

Closed kevinrue closed 5 years ago

kevinrue commented 5 years ago

https://github.com/kevinrue/unisets/blob/682f8a53a92d11b41886237c0cbcb3d7237906fa/R/BaseSet-class.R#L230

import supports additional arguments (e.g. what to use as gene identifier in the relations, like Ensembl, Entrez)

e.g.

library(org.Hs.eg.db)
basesets <- import(org.Hs.egGO2ALLEGS, gene_id="ENSEMBL")
basesets <- import(org.Hs.egGO2ALLEGS, gene_id="SYMBOL")