Demonstrate org.*.egPATH for mapping between Entrez Gene and KEGG Pathways

kevinrue / unisets

Collection of classes to store gene sets.

http://kevinrue.github.io/unisets

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Open kevinrue opened 4 years ago

kevinrue commented 4 years ago

E.g. org.Hs.egPATH Class of the object is AnnDbBiMap. When converted to table, column names are "gene_id" and "path_id".

Other notes:

KEGG.db is deprecated.
KEGGREST needs species and pathwayid and an online connection for the API.