An attempt to fix the current error on the Bioc devel builders. scater now consistently sets column names on reduced dimension matrices, which meant that in our vignette, there were no columns start.1, ... in the output of gridVectors() (but rather start.TSNE1, ...). Since we already remove the column names from reduced dimension matrices in embedVelocity(), I did the same when gridVectors() is applied to a SCE object. I guess the alternative would be to keep the column names (since this should now be consistent across all dimension reduction methods) and adapt the column names in the plot accordingly. Thoughts?
An attempt to fix the current error on the Bioc devel builders.
scaternow consistently sets column names on reduced dimension matrices, which meant that in our vignette, there were no columnsstart.1, ... in the output ofgridVectors()(but ratherstart.TSNE1, ...). Since we already remove the column names from reduced dimension matrices inembedVelocity(), I did the same whengridVectors()is applied to a SCE object. I guess the alternative would be to keep the column names (since this should now be consistent across all dimension reduction methods) and adapt the column names in the plot accordingly. Thoughts?