Closed kevinrue closed 2 weeks ago
PS C:\Users\kevin> micromamba search -c conda-forge -c bioconda scvelo
Getting repodata from channels...
conda-forge/win-64 Using cache
conda-forge/noarch Using cache
bioconda/win-64 Using cache
bioconda/noarch Using cache
scvelo 0.3.2 pyhd8ed1ab_1
────────────────────────────────────────
Name scvelo
Version 0.3.2
Build pyhd8ed1ab_1
Size 154 kB
License BSD-3-Clause
Subdir noarch
File Name scvelo-0.3.2-pyhd8ed1ab_1.conda
URL https://conda.anaconda.org/conda-forge/noarch/scvelo-0.3.2-pyhd8ed1ab_1.conda
MD5 3278754ad0ec23639df5d7751d2b885c
SHA256 6b1ca684a3a2a9734c736e675ef04cd65b44bc20011ddaf852d118141a0a4f1b
Dependencies:
- python >=3.8
- numpy >=1.17
- scipy >=1.4.1
- matplotlib-base >=3.3.0
- anndata >=0.7.5
- scvi-tools >=0.20.1
- umap-learn >=0.3.10
- numba >=0.41.0
- loompy >=2.0.12
- pandas >=1.1.1,!=1.4.0
- scanpy >=1.5
- scikit-learn >=0.21.2,<1.2.0
Other Versions (9):
Version Build
------------------------------------------
0.3.1 pyhd8ed1ab_0 (+ 1 builds)
0.3.0 pyhd8ed1ab_0
... (5 hidden versions) ...
0.1.25 py_0
0.1.24 py_0
PS C:\Users\kevin> micromamba search -c bioconda -c conda-forge --pretty --json scvelo
{
"query": {
"query": "scvelo",
"type": "search"
},
"result": {
"msg": "",
"pkgs": [
{
"build": "pyhd8ed1ab_1",
"build_number": 1,
"build_string": "pyhd8ed1ab_1",
"channel": "conda-forge",
"constrains": [],
"depends": [
"python >=3.8",
"numpy >=1.17",
"scipy >=1.4.1",
"matplotlib-base >=3.3.0",
"anndata >=0.7.5",
"scvi-tools >=0.20.1",
"umap-learn >=0.3.10",
"numba >=0.41.0",
"loompy >=2.0.12",
"pandas >=1.1.1,!=1.4.0",
"scanpy >=1.5",
"scikit-learn >=0.21.2,<1.2.0"
],
"fn": "scvelo-0.3.2-pyhd8ed1ab_1.conda",
"license": "BSD-3-Clause",
"md5": "3278754ad0ec23639df5d7751d2b885c",
"name": "scvelo",
"sha256": "6b1ca684a3a2a9734c736e675ef04cd65b44bc20011ddaf852d118141a0a4f1b",
"size": 154636,
"subdir": "noarch",
"timestamp": 1710771370,
"track_features": "",
"url": "https://conda.anaconda.org/conda-forge/noarch/scvelo-0.3.2-pyhd8ed1ab_1.conda",
"version": "0.3.2"
},
{
"build": "pyhd8ed1ab_0",
"build_number": 0,
"build_string": "pyhd8ed1ab_0",
"channel": "conda-forge",
"constrains": [],
"depends": [
"python >=3.8",
"numpy >=1.17",
"scipy >=1.4.1",
"matplotlib-base >=3.3.0",
"anndata >=0.7.5",
"scvi-tools >=0.20.1",
"umap-learn >=0.3.10",
"numba >=0.41.0",
"loompy >=2.0.12",
"pandas >=1.1.1,!=1.4.0",
"scanpy >=1.5",
"scikit-learn >=0.21.2,<1.2.0",
"chex <=0.1.8"
],
"fn": "scvelo-0.3.1-pyhd8ed1ab_0.conda",
"license": "BSD-3-Clause",
"md5": "ec4f74d6f9acb6d6f725146825a92603",
"name": "scvelo",
"sha256": "ec7edefda9fa51629da5eec43f339bade7447c7b4c70cc923112a0e2cb4f3226",
"size": 154583,
"subdir": "noarch",
"timestamp": 1701626077,
"track_features": "",
"url": "https://conda.anaconda.org/conda-forge/noarch/scvelo-0.3.1-pyhd8ed1ab_0.conda",
"version": "0.3.1"
},
{
"build": "pyhd8ed1ab_1",
"build_number": 1,
"build_string": "pyhd8ed1ab_1",
"channel": "conda-forge",
"constrains": [],
"depends": [
"python >=3.8",
"numpy >=1.17",
"scipy >=1.4.1",
"matplotlib-base >=3.3.0",
"anndata >=0.7.5",
"scvi-tools >=0.20.1",
"umap-learn >=0.3.10",
"numba >=0.41.0",
"loompy >=2.0.12",
"pandas >=1.1.1,!=1.4.0",
"scanpy >=1.5",
"scikit-learn >=0.21.2,<1.2.0"
],
"fn": "scvelo-0.3.1-pyhd8ed1ab_1.conda",
"license": "BSD-3-Clause",
"md5": "159fd94be5c5a7653adce52a7c3c273b",
"name": "scvelo",
"sha256": "88719090d99ff3c8e672be6ed6a151a2500ee09c25869ae3d5677617abb4598c",
"size": 154498,
"subdir": "noarch",
"timestamp": 1710768324,
"track_features": "",
"url": "https://conda.anaconda.org/conda-forge/noarch/scvelo-0.3.1-pyhd8ed1ab_1.conda",
"version": "0.3.1"
},
{
"build": "pyhd8ed1ab_0",
"build_number": 0,
"build_string": "pyhd8ed1ab_0",
"channel": "conda-forge",
"constrains": [],
"depends": [
"python >=3.8",
"numpy >=1.17",
"scipy >=1.4.1",
"matplotlib-base >=3.3.0",
"anndata >=0.7.5",
"scvi-tools >=0.20.1",
"umap-learn >=0.3.10",
"numba >=0.41.0",
"loompy >=2.0.12",
"pandas >=1.1.1,!=1.4.0",
"scanpy >=1.5",
"scikit-learn >=0.21.2,<1.2.0",
"chex <=0.1.8"
],
"fn": "scvelo-0.3.0-pyhd8ed1ab_0.conda",
"license": "BSD-3-Clause",
"md5": "71cd06a6a9ab2094b764e8fb381e5949",
"name": "scvelo",
"sha256": "ea75000ade4bf211290f60ad9b5110b42561f907d0fb2277b66cc1f1f16574a3",
"size": 154915,
"subdir": "noarch",
"timestamp": 1701599909,
"track_features": "",
"url": "https://conda.anaconda.org/conda-forge/noarch/scvelo-0.3.0-pyhd8ed1ab_0.conda",
"version": "0.3.0"
},
{
"build": "pyhdfd78af_0",
"build_number": 0,
"build_string": "pyhdfd78af_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"typing_extensions",
"python >=3.6",
"scipy >=1.4.1",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"matplotlib-base >=3.1.2",
"pandas >=0.23",
"umap-learn >=0.3.10",
"loompy >=2.0.12",
"scanpy >=1.5.0",
"anndata >=0.7.0"
],
"fn": "scvelo-0.2.5-pyhdfd78af_0.tar.bz2",
"license": "BSD",
"md5": "62db1732a293d41dcc30512c0f25c0c9",
"name": "scvelo",
"sha256": "5f1d2dbdc9ae07e1521f5df74d19f2b3e42bd095416bbc7a2ad666b2166fd9d6",
"size": 162719,
"subdir": "noarch",
"timestamp": 1668256668,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.5-pyhdfd78af_0.tar.bz2",
"version": "0.2.5"
},
{
"build": "pyhd8ed1ab_0",
"build_number": 0,
"build_string": "pyhd8ed1ab_0",
"channel": "conda-forge",
"constrains": [],
"depends": [
"python >=3.8",
"numpy >=1.17",
"scipy >=1.4.1",
"matplotlib-base >=3.3.0",
"scikit-learn >=0.21.2",
"anndata >=0.7.5",
"scvi-tools >=0.20.1",
"umap-learn >=0.3.10",
"numba >=0.41.0",
"loompy >=2.0.12",
"pandas >=1.1.1,!=1.4.0",
"scanpy >=1.5"
],
"fn": "scvelo-0.2.5-pyhd8ed1ab_0.conda",
"license": "BSD-3-Clause",
"md5": "2c017fb2d3adec3c75a72e1208e657e6",
"name": "scvelo",
"sha256": "129d8b4c548ab0fc9a1755d1346dddec9d65b133d020f440190c1071033f1b3f",
"size": 163065,
"subdir": "noarch",
"timestamp": 1687905294,
"track_features": "",
"url": "https://conda.anaconda.org/conda-forge/noarch/scvelo-0.2.5-pyhd8ed1ab_0.conda",
"version": "0.2.5"
},
{
"build": "pyhdfd78af_0",
"build_number": 0,
"build_string": "pyhdfd78af_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"typing_extensions",
"python >=3.6",
"scipy >=1.4.1",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"matplotlib-base >=3.1.2",
"pandas >=0.23",
"umap-learn >=0.3.10",
"loompy >=2.0.12",
"scanpy >=1.5.0",
"anndata >=0.7.0"
],
"fn": "scvelo-0.2.4-pyhdfd78af_0.tar.bz2",
"license": "BSD",
"md5": "87a426fa6b96f72e7f1d663b8ad6ef42",
"name": "scvelo",
"sha256": "82b6b5a1daa7337d3f3fee60fd73eee1e6c8927efb0b95cd96e486877b6e71bb",
"size": 142405,
"subdir": "noarch",
"timestamp": 1629993199,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.4-pyhdfd78af_0.tar.bz2",
"version": "0.2.4"
},
{
"build": "py_0",
"build_number": 0,
"build_string": "py_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scipy >=1.4.1",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"matplotlib-base >=3.1.2",
"pandas >=0.23",
"umap-learn >=0.3.10",
"loompy >=2.0.12",
"scanpy >=1.5.0",
"anndata >=0.7.0"
],
"fn": "scvelo-0.2.3-py_0.tar.bz2",
"license": "BSD",
"md5": "0140e880b4263f3300860f37606fc651",
"name": "scvelo",
"sha256": "1c05eeb5800d717a56374581c81c7731f4d8e57773d5d3ccd97f679f04ade238",
"size": 131620,
"subdir": "noarch",
"timestamp": 1613161090,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.3-py_0.tar.bz2",
"version": "0.2.3"
},
{
"build": "py_0",
"build_number": 0,
"build_string": "py_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"pandas >=0.23",
"scipy >=1.0",
"scanpy >=1.4",
"matplotlib-base >=2.2",
"loompy >=2.0.12",
"anndata >=0.6.18",
"umap-learn >=0.3"
],
"fn": "scvelo-0.2.2-py_0.tar.bz2",
"license": "BSD",
"md5": "fab35b6ae67c234c9c71e16231912d51",
"name": "scvelo",
"sha256": "22941f52979ded1ca189fe53441f14df38f02a58b0a031edfe86f1db5758eb14",
"size": 148437,
"subdir": "noarch",
"timestamp": 1595431214,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.2-py_0.tar.bz2",
"version": "0.2.2"
},
{
"build": "py_1",
"build_number": 1,
"build_string": "py_1",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scipy >=1.4.1",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"matplotlib-base >=3.1.2",
"pandas >=0.23",
"umap-learn >=0.3.10",
"loompy >=2.0.12",
"scanpy >=1.5.0",
"anndata >=0.7.0"
],
"fn": "scvelo-0.2.2-py_1.tar.bz2",
"license": "BSD",
"md5": "519a192d15206e3aab84a6a8e704a8f9",
"name": "scvelo",
"sha256": "fba2fabeb37c055f87bfbbc241be7f7633116f5c3bcc1ba44fed64cb3b239ab0",
"size": 148538,
"subdir": "noarch",
"timestamp": 1600339831,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.2-py_1.tar.bz2",
"version": "0.2.2"
},
{
"build": "py_0",
"build_number": 0,
"build_string": "py_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"pandas >=0.23",
"scipy >=1.0",
"scanpy >=1.4",
"matplotlib-base >=2.2",
"loompy >=2.0.12",
"anndata >=0.6.18",
"umap-learn >=0.3"
],
"fn": "scvelo-0.2.1-py_0.tar.bz2",
"license": "BSD",
"md5": "7a1fc0dd3ca1480ddb5af23f1852cb1a",
"name": "scvelo",
"sha256": "624b5ede408a3e5dde8463ec4e03e580504936fc8e68dc7fff47f1e4aff53074",
"size": 142765,
"subdir": "noarch",
"timestamp": 1590941218,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.2.1-py_0.tar.bz2",
"version": "0.2.1"
},
{
"build": "py_0",
"build_number": 0,
"build_string": "py_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"pandas >=0.23",
"scipy >=1.0",
"matplotlib >=2.2",
"scanpy >=1.4",
"loompy >=2.0.12",
"anndata >=0.6.18",
"umap-learn >=0.3"
],
"fn": "scvelo-0.1.25-py_0.tar.bz2",
"license": "BSD",
"md5": "81d56e00882e9319025e8bf961743230",
"name": "scvelo",
"sha256": "d33115421226345945e404448b8fbc2887f47702b911311e97b1717f50fef924",
"size": 116826,
"subdir": "noarch",
"timestamp": 1579857218,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.1.25-py_0.tar.bz2",
"version": "0.1.25"
},
{
"build": "py_0",
"build_number": 0,
"build_string": "py_0",
"channel": "bioconda",
"constrains": [],
"depends": [
"python >=3.6",
"scikit-learn >=0.21.2",
"numpy >=1.17",
"pandas >=0.23",
"scipy >=1.0",
"matplotlib >=2.2",
"scanpy >=1.4",
"loompy >=2.0.12",
"anndata >=0.6.18",
"umap-learn >=0.3"
],
"fn": "scvelo-0.1.24-py_0.tar.bz2",
"license": "BSD",
"md5": "f094f57b510cc02e5c043c6cb208475e",
"name": "scvelo",
"sha256": "c0a4f855c4f2ebcd34becc57322852b6e3609c0824c628293a54ab8a8ee8fde0",
"size": 105738,
"subdir": "noarch",
"timestamp": 1576221408,
"track_features": "",
"url": "https://conda.anaconda.org/bioconda/noarch/scvelo-0.1.24-py_0.tar.bz2",
"version": "0.1.24"
}
],
"status": "OK"
}
}
0.2.5 is resolved in whichever order bioconda and conda-forge channels are placed
However, conda-forge first gets everything but one package from conda-forge, which seems a bit better than 4-5 packages from bioconda if that one is first.
PS C:\Users\kevin> micromamba create -c conda-forge -c bioconda -n scvelo scvelo==0.2.5
conda-forge/win-64 Using cache
conda-forge/noarch Using cache
bioconda/win-64 Using cache
bioconda/noarch Using cache
Transaction
Prefix: C:\Users\kevin\micromamba\envs\scvelo
Updating specs:
- scvelo==0.2.5
Package Version Build Channel Size
--------------------------------------------------------------------------------------------------
Install:
--------------------------------------------------------------------------------------------------
+ libexpat 2.6.2 h63175ca_0 conda-forge Cached
+ python_abi 3.12 5_cp312 conda-forge Cached
+ ucrt 10.0.22621.0 h57928b3_0 conda-forge Cached
+ ca-certificates 2024.7.4 h56e8100_0 conda-forge Cached
+ intel-openmp 2024.2.1 h57928b3_1083 conda-forge 2MB
+ msys2-conda-epoch 20160418 1 conda-forge Cached
+ vc14_runtime 14.40.33810 ha82c5b3_20 conda-forge Cached
+ m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge Cached
+ m2w64-gmp 6.1.0 2 conda-forge Cached
+ vc 14.3 h8a93ad2_20 conda-forge Cached
+ vs2015_runtime 14.40.33810 h3bf8584_20 conda-forge Cached
+ m2w64-gcc-libs-core 5.3.0 7 conda-forge Cached
+ libiconv 1.17 hcfcfb64_2 conda-forge Cached
+ libbrotlicommon 1.1.0 hcfcfb64_1 conda-forge Cached
+ libaec 1.1.3 h63175ca_0 conda-forge Cached
+ libdeflate 1.21 h2466b09_0 conda-forge Cached
+ libjpeg-turbo 3.0.0 hcfcfb64_1 conda-forge Cached
+ pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge Cached
+ qhull 2020.2 hc790b64_5 conda-forge Cached
+ libwebp-base 1.4.0 hcfcfb64_0 conda-forge Cached
+ tk 8.6.13 h5226925_1 conda-forge Cached
+ openssl 3.3.1 h2466b09_2 conda-forge Cached
+ libzlib 1.3.1 h2466b09_1 conda-forge Cached
+ bzip2 1.0.8 h2466b09_7 conda-forge Cached
+ libsqlite 3.46.0 h2466b09_0 conda-forge Cached
+ lerc 4.0.0 h63175ca_0 conda-forge Cached
+ libffi 3.4.2 h8ffe710_5 conda-forge Cached
+ xz 5.2.6 h8d14728_0 conda-forge Cached
+ m2w64-gcc-libgfortran 5.3.0 6 conda-forge Cached
+ libbrotlienc 1.1.0 hcfcfb64_1 conda-forge Cached
+ libbrotlidec 1.1.0 hcfcfb64_1 conda-forge Cached
+ krb5 1.21.3 hdf4eb48_0 conda-forge Cached
+ libssh2 1.11.0 h7dfc565_0 conda-forge Cached
+ zstd 1.5.6 h0ea2cb4_0 conda-forge Cached
+ libxml2 2.12.7 h0f24e4e_4 conda-forge Cached
+ libpng 1.6.43 h19919ed_0 conda-forge Cached
+ m2w64-gcc-libs 5.3.0 7 conda-forge Cached
+ brotli-bin 1.1.0 hcfcfb64_1 conda-forge Cached
+ libcurl 8.9.1 h18fefc2_0 conda-forge Cached
+ libtiff 4.6.0 hb151862_4 conda-forge Cached
+ libhwloc 2.11.1 default_h8125262_1000 conda-forge Cached
+ freetype 2.12.1 hdaf720e_2 conda-forge Cached
+ xorg-libxdmcp 1.1.3 hcd874cb_0 conda-forge Cached
+ pthread-stubs 0.4 hcd874cb_1001 conda-forge Cached
+ xorg-libxau 1.0.11 hcd874cb_0 conda-forge Cached
+ brotli 1.1.0 hcfcfb64_1 conda-forge Cached
+ hdf5 1.14.3 nompi_h2b43c12_105 conda-forge Cached
+ openjpeg 2.5.2 h3d672ee_0 conda-forge Cached
+ lcms2 2.16 h67d730c_0 conda-forge Cached
+ tbb 2021.12.0 hc790b64_3 conda-forge Cached
+ libxcb 1.16 hcd874cb_0 conda-forge Cached
+ mkl 2024.1.0 h66d3029_694 conda-forge 109MB
+ libblas 3.9.0 23_win64_mkl conda-forge 5MB
+ libcblas 3.9.0 23_win64_mkl conda-forge 5MB
+ liblapack 3.9.0 23_win64_mkl conda-forge 5MB
+ tzdata 2024a h0c530f3_0 conda-forge Cached
+ python 3.12.5 h889d299_0_cpython conda-forge Cached
+ wheel 0.44.0 pyhd8ed1ab_0 conda-forge Cached
+ setuptools 72.2.0 pyhd8ed1ab_0 conda-forge Cached
+ pip 24.2 pyhd8ed1ab_0 conda-forge Cached
+ cached_property 1.5.2 pyha770c72_1 conda-forge Cached
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached
+ munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB
+ pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge Cached
+ cycler 0.12.1 pyhd8ed1ab_0 conda-forge Cached
+ certifi 2024.7.4 pyhd8ed1ab_0 conda-forge Cached
+ pytz 2024.1 pyhd8ed1ab_0 conda-forge Cached
+ python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge Cached
+ threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge Cached
+ stdlib-list 0.10.0 pyhd8ed1ab_0 conda-forge Cached
+ array-api-compat 1.8 pyhd8ed1ab_0 conda-forge Cached
+ exceptiongroup 1.2.2 pyhd8ed1ab_0 conda-forge Cached
+ six 1.16.0 pyh6c4a22f_0 conda-forge Cached
+ legacy-api-wrap 1.4 pyhd8ed1ab_1 conda-forge Cached
+ packaging 24.1 pyhd8ed1ab_0 conda-forge Cached
+ networkx 3.3 pyhd8ed1ab_1 conda-forge Cached
+ natsort 8.4.0 pyhd8ed1ab_0 conda-forge Cached
+ joblib 1.4.2 pyhd8ed1ab_0 conda-forge Cached
+ get-annotations 0.1.2 pyhd8ed1ab_0 conda-forge 10kB
+ typing_extensions 4.12.2 pyha770c72_0 conda-forge Cached
+ cached-property 1.5.2 hd8ed1ab_1 conda-forge Cached
+ click 8.1.7 win_pyh7428d3b_0 conda-forge 85kB
+ tqdm 4.66.5 pyhd8ed1ab_0 conda-forge Cached
+ session-info 1.0.0 pyhd8ed1ab_0 conda-forge 12kB
+ python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge Cached
+ pillow 10.4.0 py312h381445a_0 conda-forge Cached
+ numpy 1.26.4 py312h8753938_0 conda-forge 6MB
+ llvmlite 0.43.0 py312h1f7db74_0 conda-forge Cached
+ kiwisolver 1.4.5 py312h0d7def4_1 conda-forge Cached
+ fonttools 4.53.1 py312h4389bb4_0 conda-forge Cached
+ contourpy 1.2.1 py312h0d7def4_0 conda-forge Cached
+ pandas 2.2.2 py312h72972c8_1 conda-forge Cached
+ h5py 3.11.0 nompi_py312ha036244_102 conda-forge Cached
+ scipy 1.14.1 py312h1f4e10d_0 conda-forge Cached
+ numba 0.60.0 py312hcccf92d_0 conda-forge Cached
+ matplotlib-base 3.9.2 py312h90004f6_0 conda-forge Cached
+ scikit-learn 1.5.1 py312h816cc57_0 conda-forge Cached
+ numpy_groupies 0.11.2 pyhd8ed1ab_0 conda-forge 37kB
+ patsy 0.5.6 pyhd8ed1ab_0 conda-forge Cached
+ anndata 0.10.8 pyhd8ed1ab_0 conda-forge Cached
+ seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge Cached
+ pynndescent 0.5.13 pyhff2d567_0 conda-forge Cached
+ loompy 3.0.6 py_0 conda-forge 41kB
+ statsmodels 0.14.2 py312h1a27103_0 conda-forge Cached
+ umap-learn 0.5.6 py312h2e8e312_1 conda-forge Cached
+ seaborn 0.13.2 hd8ed1ab_2 conda-forge Cached
+ scanpy 1.10.2 pyhd8ed1ab_0 conda-forge 2MB
+ scvelo 0.2.5 pyhdfd78af_0 bioconda Cached
Summary:
Install: 108 packages
Total download: 135MB
--------------------------------------------------------------------------------------------------
Confirm changes: [Y/n]
Sad face
The latest environment above leads to the error
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Error in py_module_import(module, convert = convert) :
AttributeError: module 'matplotlib.cbook' has no attribute 'mplDeprecation'
Run `reticulate::py_last_error()` for details.
Error in .activate_fallback(proc, testload, env = env, envpath = envpath, :
AttributeError: module 'matplotlib.cbook' has no attribute 'mplDeprecation'
Run `reticulate::py_last_error()` for details.
Which seems to occur during the installation of the environment, before scvelo is even run.
Fix seems to be matplotlib <= 3.7.3
No luck:
(scvelo) PS C:\Users\kevin> micromamba install -c conda-forge -c bioconda -n scvelo scvelo==0.2.5 matplotlib==3.7.3
conda-forge/win-64 Using cache
conda-forge/noarch Using cache
bioconda/win-64 Using cache
bioconda/noarch Using cache
Pinned packages:
- python 3.12.*
error libmamba Could not solve for environment specs
The following packages are incompatible
├─ matplotlib 3.7.3 is installable with the potential options
│ ├─ matplotlib 3.7.3 would require
│ │ └─ python >=3.10,<3.11.0a0 , which can be installed;
│ ├─ matplotlib 3.7.3 would require
│ │ └─ python >=3.11,<3.12.0a0 , which can be installed;
│ ├─ matplotlib 3.7.3 would require
│ │ └─ python >=3.8,<3.9.0a0 , which can be installed;
│ └─ matplotlib 3.7.3 would require
│ └─ python >=3.9,<3.10.0a0 , which can be installed;
└─ pin-1 is not installable because it requires
└─ python 3.12.* , which conflicts with any installable versions previously reported.
critical libmamba Could not solve for environment specs
This seems to help: https://github.com/theislab/scvelo/issues/1124#issuecomment-1802261666
Namely:
(scvelo) PS C:\Users\kevin> micromamba install -c conda-forge -c bioconda -n scvelo scvelo==0.2.5 matplotlib==3.7.2 python==3.8
conda-forge/win-64 Using cache
conda-forge/noarch Using cache
bioconda/win-64 Using cache
bioconda/noarch Using cache
Transaction
Prefix: C:\Users\kevin\micromamba\envs\scvelo
Updating specs:
- scvelo==0.2.5
- matplotlib==3.7.2
- python==3.8
Package Version Build Channel Size
------------------------------------------------------------------------------------
Install:
------------------------------------------------------------------------------------
+ icu 70.1 h0e60522_0 conda-forge 18MB
+ sqlite 3.46.0 h2466b09_0 conda-forge 886kB
+ jpeg 9e h8ffe710_2 conda-forge 375kB
+ libintl 0.22.5 h5728263_3 conda-forge 96kB
+ libasprintf 0.22.5 h5728263_3 conda-forge 50kB
+ libogg 1.3.5 h2466b09_0 conda-forge 35kB
+ libclang13 15.0.7 default_hf64faad_5 conda-forge 22MB
+ pcre2 10.43 h17e33f8_0 conda-forge 818kB
+ zlib 1.2.13 h2466b09_6 conda-forge 108kB
+ libgettextpo 0.22.5 h5728263_3 conda-forge 171kB
+ gettext-tools 0.22.5 h5a7288d_3 conda-forge 3MB
+ libintl-devel 0.22.5 h5728263_3 conda-forge 41kB
+ libasprintf-devel 0.22.5 h5728263_3 conda-forge 36kB
+ libvorbis 1.3.7 h0e60522_0 conda-forge 274kB
+ libglib 2.80.2 h0df6a38_0 conda-forge 4MB
+ libclang 15.0.7 default_h3a3e6c3_5 conda-forge 148kB
+ libgettextpo-devel 0.22.5 h5728263_3 conda-forge 40kB
+ glib-tools 2.80.2 h2f9d560_0 conda-forge 95kB
+ gettext 0.22.5 h5728263_3 conda-forge 34kB
+ hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge 15kB
+ hpack 4.0.0 pyh9f0ad1d_0 conda-forge 25kB
+ pycparser 2.22 pyhd8ed1ab_0 conda-forge 105kB
+ win_inet_pton 1.1.0 pyhd8ed1ab_6 conda-forge 8kB
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge 47kB
+ idna 3.7 pyhd8ed1ab_0 conda-forge 53kB
+ tomli 2.0.1 pyhd8ed1ab_0 conda-forge Cached
+ ply 3.11 pyhd8ed1ab_2 conda-forge 49kB
+ zipp 3.20.0 pyhd8ed1ab_0 conda-forge Cached
+ platformdirs 4.2.2 pyhd8ed1ab_0 conda-forge 21kB
+ olefile 0.47 pyhd8ed1ab_0 conda-forge 39kB
+ toml 0.10.2 pyhd8ed1ab_0 conda-forge 18kB
+ h2 4.1.0 pyhd8ed1ab_0 conda-forge 47kB
+ pysocks 1.7.1 pyh0701188_6 conda-forge 19kB
+ importlib_resources 6.4.4 pyhd8ed1ab_0 conda-forge 32kB
+ importlib-metadata 8.4.0 pyha770c72_0 conda-forge Cached
+ importlib-resources 6.4.4 pyhd8ed1ab_0 conda-forge 9kB
+ glib 2.80.2 h0df6a38_0 conda-forge 571kB
+ gstreamer 1.21.3 h6b5321d_1 conda-forge 2MB
+ cffi 1.17.0 py38h4cb3324_0 conda-forge 236kB
+ brotli-python 1.1.0 py38hd3f51b4_1 conda-forge 322kB
+ unicodedata2 15.1.0 py38h91455d4_0 conda-forge 371kB
+ tornado 6.4.1 py38h4cb3324_0 conda-forge 645kB
+ sip 6.7.12 py38hd3f51b4_0 conda-forge 501kB
+ gst-plugins-base 1.21.3 h001b923_1 conda-forge 2MB
+ zstandard 0.23.0 py38hf92978b_0 conda-forge 311kB
+ pyqt5-sip 12.11.0 py38hd3f51b4_3 conda-forge 79kB
+ qt-main 5.15.6 h068e40c_6 conda-forge 62MB
+ pyqt 5.15.7 py38hd6c051e_3 conda-forge 4MB
+ matplotlib 3.7.2 py38haa244fe_0 conda-forge 9kB
+ urllib3 2.2.2 pyhd8ed1ab_1 conda-forge 95kB
+ requests 2.32.3 pyhd8ed1ab_0 conda-forge 59kB
+ pooch 1.8.2 pyhd8ed1ab_0 conda-forge 54kB
Change:
------------------------------------------------------------------------------------
- libxml2 2.12.7 h0f24e4e_4 conda-forge Cached
+ libxml2 2.12.7 h283a6d9_1 conda-forge 2MB
- kiwisolver 1.4.5 py312h0d7def4_1 conda-forge Cached
+ kiwisolver 1.4.5 py38hb1fd069_1 conda-forge 56kB
- fonttools 4.53.1 py312h4389bb4_0 conda-forge Cached
+ fonttools 4.53.1 py38h4cb3324_0 conda-forge 2MB
- umap-learn 0.5.6 py312h2e8e312_1 conda-forge Cached
+ umap-learn 0.5.6 py38haa244fe_1 conda-forge 138kB
Reinstall:
------------------------------------------------------------------------------------
o wheel 0.44.0 pyhd8ed1ab_0 conda-forge Cached
o setuptools 72.2.0 pyhd8ed1ab_0 conda-forge Cached
o pip 24.2 pyhd8ed1ab_0 conda-forge Cached
o typing_extensions 4.12.2 pyha770c72_0 conda-forge Cached
o threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge Cached
o stdlib-list 0.10.0 pyhd8ed1ab_0 conda-forge Cached
o six 1.16.0 pyh6c4a22f_0 conda-forge Cached
o pytz 2024.1 pyhd8ed1ab_0 conda-forge Cached
o python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge Cached
o packaging 24.1 pyhd8ed1ab_0 conda-forge Cached
o natsort 8.4.0 pyhd8ed1ab_0 conda-forge Cached
o munkres 1.1.4 pyh9f0ad1d_0 conda-forge Cached
o legacy-api-wrap 1.4 pyhd8ed1ab_1 conda-forge Cached
o joblib 1.4.2 pyhd8ed1ab_0 conda-forge Cached
o get-annotations 0.1.2 pyhd8ed1ab_0 conda-forge Cached
o exceptiongroup 1.2.2 pyhd8ed1ab_0 conda-forge Cached
o cycler 0.12.1 pyhd8ed1ab_0 conda-forge Cached
o colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached
o certifi 2024.7.4 pyhd8ed1ab_0 conda-forge Cached
o cached_property 1.5.2 pyha770c72_1 conda-forge Cached
o array-api-compat 1.8 pyhd8ed1ab_0 conda-forge Cached
o session-info 1.0.0 pyhd8ed1ab_0 conda-forge Cached
o python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge Cached
o tqdm 4.66.5 pyhd8ed1ab_0 conda-forge Cached
o click 8.1.7 win_pyh7428d3b_0 conda-forge Cached
o cached-property 1.5.2 hd8ed1ab_1 conda-forge Cached
o patsy 0.5.6 pyhd8ed1ab_0 conda-forge Cached
o seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge Cached
o loompy 3.0.6 py_0 conda-forge Cached
o pynndescent 0.5.13 pyhff2d567_0 conda-forge Cached
o seaborn 0.13.2 hd8ed1ab_2 conda-forge Cached
o scanpy 1.10.2 pyhd8ed1ab_0 conda-forge Cached
o scvelo 0.2.5 pyhdfd78af_0 bioconda Cached
Downgrade:
------------------------------------------------------------------------------------
- libzlib 1.3.1 h2466b09_1 conda-forge Cached
+ libzlib 1.2.13 h2466b09_6 conda-forge 56kB
- openssl 3.3.1 h2466b09_2 conda-forge Cached
+ openssl 1.1.1w hcfcfb64_0 conda-forge 5MB
- libjpeg-turbo 3.0.0 hcfcfb64_1 conda-forge Cached
+ libjpeg-turbo 2.1.4 hcfcfb64_0 conda-forge 1MB
- libssh2 1.11.0 h7dfc565_0 conda-forge Cached
+ libssh2 1.10.0 h680486a_3 conda-forge 233kB
- krb5 1.21.3 hdf4eb48_0 conda-forge Cached
+ krb5 1.20.1 h6609f42_0 conda-forge 715kB
- python 3.12.5 h889d299_0_cpython conda-forge Cached
+ python 3.8.0 hc9e8b01_5 conda-forge 20MB
- libtiff 4.6.0 hb151862_4 conda-forge Cached
+ libtiff 4.2.0 h0c97f57_3 conda-forge 1MB
- libcurl 8.9.1 h18fefc2_0 conda-forge Cached
+ libcurl 8.1.2 h68f0423_0 conda-forge 313kB
- lcms2 2.16 h67d730c_0 conda-forge Cached
+ lcms2 2.12 h2a16943_0 conda-forge 903kB
- openjpeg 2.5.2 h3d672ee_0 conda-forge Cached
+ openjpeg 2.4.0 hb211442_1 conda-forge 243kB
- hdf5 1.14.3 nompi_h2b43c12_105 conda-forge Cached
+ hdf5 1.14.0 nompi_h97a5375_103 conda-forge 2MB
- pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge Cached
+ pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge 81kB
- networkx 3.3 pyhd8ed1ab_1 conda-forge Cached
+ networkx 3.1 pyhd8ed1ab_0 conda-forge 1MB
- python_abi 3.12 5_cp312 conda-forge Cached
+ python_abi 3.8 2_cp38 conda-forge 5kB
- pillow 10.4.0 py312h381445a_0 conda-forge Cached
+ pillow 8.2.0 py38h9273828_1 conda-forge 793kB
- numpy 1.26.4 py312h8753938_0 conda-forge Cached
+ numpy 1.24.4 py38h1d91fd2_0 conda-forge 6MB
- llvmlite 0.43.0 py312h1f7db74_0 conda-forge Cached
+ llvmlite 0.41.1 py38h19421c1_0 conda-forge 17MB
- h5py 3.11.0 nompi_py312ha036244_102 conda-forge Cached
+ h5py 3.9.0 nompi_py38h4f44683_100 conda-forge 889kB
- contourpy 1.2.1 py312h0d7def4_0 conda-forge Cached
+ contourpy 1.1.1 py38hb1fd069_1 conda-forge 174kB
- pandas 2.2.2 py312h72972c8_1 conda-forge Cached
+ pandas 2.0.3 py38hf08cf0d_1 conda-forge 11MB
- numba 0.60.0 py312hcccf92d_0 conda-forge Cached
+ numba 0.58.1 py38h4a59444_0 conda-forge 4MB
- matplotlib-base 3.9.2 py312h90004f6_0 conda-forge Cached
+ matplotlib-base 3.7.2 py38h2d9580e_0 conda-forge 7MB
- numpy_groupies 0.11.2 pyhd8ed1ab_0 conda-forge Cached
+ numpy_groupies 0.9.22 pyhd8ed1ab_0 conda-forge 27kB
- scipy 1.14.1 py312h1f4e10d_0 conda-forge Cached
+ scipy 1.10.1 py38h1aea9ed_3 conda-forge 18MB
- statsmodels 0.14.2 py312h1a27103_0 conda-forge Cached
+ statsmodels 0.14.1 py38he7056a7_0 conda-forge 10MB
- scikit-learn 1.5.1 py312h816cc57_0 conda-forge Cached
+ scikit-learn 1.3.2 py38h4f736e5_2 conda-forge 7MB
- anndata 0.10.8 pyhd8ed1ab_0 conda-forge Cached
+ anndata 0.9.2 pyhd8ed1ab_0 conda-forge 87kB
Summary:
Install: 52 packages
Change: 4 packages
Reinstall: 33 packages
Downgrade: 27 packages
Total download: 244MB
------------------------------------------------------------------------------------
Confirm changes: [Y/n]
Note: from the current man page of ?scvelo
scVelo v0.2.5 from bioconda is used. Later versions of scVelo depend on jaxlib which is not supported on Windows (https://github.com/google/jax/issues/438). Note that matplotlib is pinned to v3.6.3 (https://github.com/scverse/scanpy/issues/2411), pandas is pinned to v1.5.2 (https://stackoverflow.com/questions/76234312/importerror-cannot-import-name-is-categorical-from-pandas-api-types), and numpy is pinned to v1.21.1 (https://github.com/theislab/scvelo/issues/1109).
Latest environment seems to have issue with from ._core.anndata import AnnData
> reticulate::py_last_error()
── Python Exception Message ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Traceback (most recent call last):
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 96, in _run_hook
module = hook()
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "C:\Users\kevin\BASILI~1\117~1.2\VELOCI~1\115~1.6\env\lib\site-packages\scvelo\__init__.py", line 2, in <module>
from anndata import AnnData
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 96, in _run_hook
module = hook()
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "C:\Users\kevin\BASILI~1\117~1.2\VELOCI~1\115~1.6\env\lib\site-packages\anndata\__init__.py", line 7, in <module>
from ._core.anndata import AnnData
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 96, in _run_hook
module = hook()
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "C:\Users\kevin\BASILI~1\117~1.2\VELOCI~1\115~1.6\env\lib\site-packages\anndata\_core\anndata.py", line 17, in <module>
import h5py
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 96, in _run_hook
module = hook()
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "C:\Users\kevin\BASILI~1\117~1.2\VELOCI~1\115~1.6\env\lib\site-packages\h5py\__init__.py", line 25, in <module>
from . import _errors
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 96, in _run_hook
module = hook()
File "C:\Users\kevin\AppData\Local\R\cache\R\renv\library\velociraptor-96ea9712\windows\R-4.4\x86_64-w64-mingw32\reticulate\python\rpytools\loader.py", line 120, in _hook
return _find_and_load(name, import_)
ImportError: DLL load failed while importing _errors: The specified module could not be found.
── R Traceback ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
▆
1. ├─velociraptor::scvelo(list(X = spliced, spliced = spliced, unspliced = unspliced))
2. └─velociraptor::scvelo(list(X = spliced, spliced = spliced, unspliced = unspliced)) at velociraptor/R/scvelo.R:286:22
3. └─velociraptor (local) .local(x, ...)
4. └─basilisk::basiliskRun(...) at velociraptor/R/scvelo.R:200:5
5. └─basilisk::basiliskStart(...)
6. └─basilisk:::.activate_fallback(...)
7. ├─base::try(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─basilisk::basiliskRun(...)
13. └─basilisk (local) fun(...)
14. └─reticulate::import(pkg)
15. └─reticulate:::py_module_import(module, convert = convert)
See `reticulate::py_last_error()$r_trace$full_call` for more details.
Did I run into this one yet?
micromamba.bat env create -n scvelo_condaforge -c conda-forge -c bioconda scvelo==0.3.2
conda-forge/win-64 Using cache
conda-forge/noarch Using cache
bioconda/win-64 Using cache
bioconda/noarch Using cache
error libmamba Could not solve for environment specs
The following package could not be installed
└─ scvelo 0.3.2 is not installable because it requires
└─ scvi-tools >=0.20.1 , which requires
└─ pytorch >=1.8.0 , which does not exist (perhaps a missing channel).
This seems to install properly
micromamba env create -n scvelo -c conda-forge -c bioconda scvelo==0.2.5 matplotlib==3.7.3
EDIT: Ran into error
Quitting from lines 76-82 [unnamed-chunk-5] (velociraptor.Rmd)
Error: processing vignette 'velociraptor.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building 'velociraptor.Rmd'
Seems related to https://github.com/theislab/scvelo/issues/811
Trying
micromamba env create -n scvelo -c conda-forge -c bioconda scvelo==0.2.5 matplotlib==3.7.3 pandas==1.3.5
Trying
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 matplotlib==3.6.3 pandas==1.5.2 numpy==1.21.1 scipy==1.13.1
Impossible
error libmamba Could not solve for environment specs
The following packages are incompatible
├─ numpy 1.21.1 is requested and can be installed;
└─ scipy 1.13.1 is not installable because it requires
└─ numpy >=1.22.4,<2.3 but there are no viable options
├─ numpy [1.22.4|1.23.0|...|2.1.0] conflicts with any installable versions previously reported;
└─ numpy [2.0.0rc1|2.0.0rc2|2.1.0rc1] would require
└─ _numpy_rc, which does not exist (perhaps a missing channel).
critical libmamba Could not solve for environment specs
Trying
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 matplotlib==3.6.3 pandas==1.5.2 scipy==1.13.1
(removed numpy requirement)
EDIT: Ran back into error above
Trying
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 python=3.8 matplotlib=3.7.2 jinja2=3.0.3
Source: https://github.com/theislab/scvelo/issues/1124#issuecomment-1802261666
Back to error
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases
Meaning back to matplotlib 3.6.3
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 python=3.8 matplotlib=3.6.3 jinja2=3.0.3
Back to error
ImportError: cannot import name 'is_categorical' from 'pandas.api.types' (C:\Users\kevin\BASILI~1\117~1.2\VELOCI~1\115~1.13\env\lib\site-packages\pandas\api\types__init__.py)
Meaning back to pandas 1.5.2
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 python=3.8 matplotlib=3.6.3 pandas==1.5.2 jinja2=3.0.3
Back to error
Error in py_call_impl(callable, call_args$unnamed, call_args$named) : ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (1, 4) + inhomogeneous part.
Back to numpy 1.21.1
micromamba env create -n scvelo -c bioconda -c conda-forge scvelo==0.2.5 python=3.8 matplotlib=3.6.3 pandas==1.5.2 numpy==1.21.1 jinja2=3.0.3
Hurray! Fixed by #82
scvelo==0.3.2
not available due to dependency onjaxlib>=0.4.3
scvelo==0.3.1
not available due to dependency onpytorch >=1.8.0
0.3.0 same