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kevlar-dev / kevlar

Reference-free variant discovery in large eukaryotic genomes
https://kevlar.readthedocs.io
MIT License
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New workflow for preprocessing BAM data #305

Closed standage closed 5 years ago

standage commented 5 years ago

This update adds a proof-of-concept workflow for pre-processing BAM data prior to variant prediction with kevlar.

standage commented 5 years ago

I'm sure @mourisl will be happy to know that Lighter's -saveTrustedKmers and -loadTrustedKmers features are getting frequent use! :-) Thanks for implementing that feature.

codecov[bot] commented 5 years ago

Codecov Report

Merging #305 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #305   +/-   ##
=======================================
  Coverage   96.84%   96.84%           
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  Files          48       48           
  Lines        2946     2946           
  Branches      508      508           
=======================================
  Hits         2853     2853           
  Misses         60       60           
  Partials       33       33

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