search

kevlar-dev / kevlar

Reference-free variant discovery in large eukaryotic genomes
https://kevlar.readthedocs.io
MIT License
41 stars 9 forks source link

Sandbox scripts #335

Closed standage closed 5 years ago

standage commented 5 years ago

This update adds several scripts to a new sandbox/ directory that is now installed alongside kevlar. These are primarily for convenience during development but may also be of interest to end users. See #334.

codecov[bot] commented 5 years ago

Codecov Report

Merging #335 into master will decrease coverage by 0.02%. The diff coverage is 81.63%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #335      +/-   ##
==========================================
- Coverage   95.16%   95.13%   -0.02%     
==========================================
  Files          47       48       +1     
  Lines        2952     3000      +48     
  Branches      546      561      +15     
==========================================
+ Hits         2809     2854      +45     
- Misses        105      106       +1     
- Partials       38       40       +2
Impacted Files Coverage Δ
kevlar/__init__.py 91.34% <100%> (+0.07%) :arrow_up:
kevlar/cli/localize.py 100% <100%> (ø) :arrow_up:
kevlar/vcf.py 97.38% <33.33%> (+0.03%) :arrow_up:
kevlar/evaluate.py 84.09% <84.09%> (ø)
kevlar/intervalforest.py 81.48% <0%> (+14.81%) :arrow_up:

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update becd493...23332d3. Read the comment docs.