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kevlar-dev / kevlar

Reference-free variant discovery in large eukaryotic genomes
https://kevlar.readthedocs.io
MIT License
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Save and load pickled varfilter index #342

Closed standage closed 5 years ago

standage commented 5 years ago

This update enables the kevlar varfilter command to save and load from pickles of the variant index. Closes #340.

codecov[bot] commented 5 years ago

Codecov Report

Merging #342 into master will increase coverage by 0.03%. The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #342      +/-   ##
==========================================
+ Coverage   95.05%   95.07%   +0.03%     
==========================================
  Files          48       48              
  Lines        3029     3045      +16     
  Branches      570      572       +2     
==========================================
+ Hits         2879     2895      +16     
  Misses        108      108              
  Partials       42       42
Impacted Files Coverage Δ
kevlar/evaluate.py 84.78% <100%> (+0.69%) :arrow_up:
kevlar/cli/varfilter.py 100% <100%> (ø) :arrow_up:
kevlar/varfilter.py 100% <100%> (ø) :arrow_up:

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