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kevlar-dev / kevlar

Reference-free variant discovery in large eukaryotic genomes
https://kevlar.readthedocs.io
MIT License
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Update to variant.annotate #351

Closed standage closed 5 years ago

standage commented 5 years ago

This update modifies the default behavior of the variant.annotate method. Before, it would append values by default. Now it replaces all values by default. The old behavior can be retained with replace=False. Closes #347.

codecov[bot] commented 5 years ago

Codecov Report

Merging #351 into master will increase coverage by <.01%. The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #351      +/-   ##
==========================================
+ Coverage   95.09%   95.09%   +<.01%     
==========================================
  Files          48       48              
  Lines        3054     3056       +2     
  Branches      574      575       +1     
==========================================
+ Hits         2904     2906       +2     
  Misses        108      108              
  Partials       42       42
Impacted Files Coverage Δ
kevlar/vcf.py 95.99% <100%> (+0.03%) :arrow_up:

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