Closed standage closed 5 years ago
Merging #353 into master will increase coverage by
2.04%
. The diff coverage is100%
.
@@ Coverage Diff @@
## master #353 +/- ##
==========================================
+ Coverage 95.09% 97.13% +2.04%
==========================================
Files 48 48
Lines 3056 2894 -162
Branches 575 532 -43
==========================================
- Hits 2906 2811 -95
+ Misses 108 51 -57
+ Partials 42 32 -10
Impacted Files | Coverage Δ | |
---|---|---|
kevlar/simlike.py | 98.65% <ø> (+2.17%) |
:arrow_up: |
kevlar/call.py | 95.15% <ø> (+6.82%) |
:arrow_up: |
kevlar/seqio.py | 100% <ø> (+32.69%) |
:arrow_up: |
kevlar/varmap.py | 99.01% <ø> (ø) |
:arrow_down: |
kevlar/__init__.py | 90.27% <ø> (-1.07%) |
:arrow_down: |
kevlar/cli/augment.py | 100% <ø> (ø) |
:arrow_up: |
kevlar/novel.py | 98.64% <100%> (-0.02%) |
:arrow_down: |
kevlar/vcf.py | 95.97% <100%> (-0.01%) |
:arrow_down: |
kevlar/augment.py | 100% <100%> (ø) |
:arrow_up: |
Continue to review full report at Codecov.
Legend - Click here to learn more
Δ = absolute <relative> (impact)
,ø = not affected
,? = missing data
Powered by Codecov. Last update 419d2b1...1dde7f3. Read the comment docs.
This update drops all handling of mate sequences. The ability to parse augmented Fastx files with mate seqs is retained for now, although kevlar will no longer create augfastx files with mate seq annotations. Closes #344.