Closed standage closed 5 years ago
Merging #361 into master will increase coverage by
<.01%
. The diff coverage is100%
.
@@ Coverage Diff @@
## master #361 +/- ##
==========================================
+ Coverage 96.79% 96.79% +<.01%
==========================================
Files 48 48
Lines 2895 2899 +4
Branches 536 537 +1
==========================================
+ Hits 2802 2806 +4
Misses 58 58
Partials 35 35
Impacted Files | Coverage Δ | |
---|---|---|
kevlar/simlike.py | 98.66% <100%> (+0.01%) |
:arrow_up: |
kevlar/cli/simlike.py | 100% <100%> (ø) |
:arrow_up: |
kevlar/vcf.py | 93.33% <100%> (+0.02%) |
:arrow_up: |
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This update adds an
--ambig-thresh
flag tokevlar simlike
to discard contigs with too many ambiguous variant calls (default: 10 or more). Closes #360.