Closed 17tranap closed 4 years ago
Hi @17tranap! I don't think this is an issue with RAM. Could you let me know what version of networkx you have installed? That might be the issue here.
Thank you for your prompt response. I tried the dev version of kevlar on another system with networkx-2.4 and it worked. It looks like my local python dependencies need to be sorted out.
Glad you could resolve this!
Running from the command line, using the augmented fasta output from the kevlar workflow, I get this error indicating there is no 'node' attribute, and looking through the ReadGraph.py file, there is no node struct declared. I do run pretty close to my RAM capacity, is this the cause?