kevlar-dev / kevlar

Reference-free variant discovery in large eukaryotic genomes
https://kevlar.readthedocs.io
MIT License
40 stars 9 forks source link

How to just get the Kmer? #383

Closed ghost closed 4 years ago

ghost commented 4 years ago

Hello, I am a bit confused, once one had the augmented fastq from Kevlar noverl, how do I extract the kmer themselves, and in the end, is it possible to have a list of the variants? For example, given the kmer ATTCGGTTACA , that's it's the last C that is the variant.

Thank you