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kexinhuang12345 / DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
https://doi.org/10.1093/bioinformatics/btaa1005
BSD 3-Clause "New" or "Revised" License
962 stars 272 forks source link

ModuleNotFoundError: No module named 'descriptastorus' #178

Open reni8911 opened 3 months ago

reni8911 commented 3 months ago

I installed the environment through environment.yml, and after successful installation, I ran Drug Properties Prediction with an error message as follows:

Traceback (most recent call last): File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 15, in from descriptastorus.descriptors import rdDescriptors, rdNormalizedDescriptors ModuleNotFoundError: No module named 'descriptastorus'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "run_admet.py", line 4, in from DeepPurpose import CompoundPred as models File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/CompoundPred.py", line 24, in from DeepPurpose.utils import File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 17, in raise ImportError("Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor") ImportError: Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor

Prompt for installing descriptastrorus and pandas flavor. An error occurred while installing descriptastrorus, with the following error message:

pip install git+https://github.com/bp-kelley/descriptastorus

Looking in indexes: http://pypi.douban.com/simple/, https://pypi.ngc.nvidia.com Collecting git+https://github.com/bp-kelley/descriptastorus Cloning https://github.com/bp-kelley/descriptastorus to /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq Running command git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq fatal: unable to access 'https://github.com/bp-kelley/descriptastorus/': Empty reply from server warning: Clone succeeded, but checkout failed. You can inspect what was checked out with 'git status' and retry the checkout with 'git checkout -f HEAD'

error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully. │ exit code: 128 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully. │ exit code: 128 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.