How to preprocess myself dataset

kexinhuang12345 / MolTrans

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

BSD 3-Clause "New" or "Revised" License

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Closed xnuohz closed 3 years ago

xnuohz commented 3 years ago

how to use your code to preprocess dataframe like

d_id	t_id	y
C#CC(N)CCC(=O)O	MGQACGHSILCRSQQ...	0

to get "drug_encoding" and "target_encoding"? Thanks:)

xnuohz commented 3 years ago

Sry，it seems "drug_encoding" and "target_encoding" are not necessary, they are processed by BIN_Data_Encoder.