Missing esearch and efetch

keylabivdc / VIP

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Missing esearch and efetch #5

Open IgorFobia opened 8 years ago

IgorFobia commented 8 years ago

installer/db_installer.sh Gives this error:

db_installer.sh: 370: db_installer.sh: esearch: not found
db_installer.sh: 370: db_installer.sh: efetch: not found

Please make those commands be installed by installer/dependency_installer.sh

keylabivdc commented 8 years ago

esearch and efetch were included in the edirect folder under VIP. You can see echo "PATH=\$PATH:$VIP_PATH/edirect" >> ~/.bashrc in the dependency_installer.sh. I re-run the dependency_installer.sh within a ubuntu docker and no errors reported. Could you see the $PATH in your system?

IgorFobia commented 8 years ago

Thank you for your quick reaction. I re-run the dependency_installer.sh, I'll tell you if this problem persists. PATH seems correct now. For you information, dependency_installer.sh gave me these error messages:

cp: omitting directory ‘edirect’
cp: omitting directory ‘installer’
mv: cannot move ‘edirect’ to ‘/usr/VIP/edirect’: Directory not empty