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kftsehk / phy-clusters

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conda install gnuplot failed #23

Closed kftsehk closed 5 years ago

kftsehk commented 5 years ago

Command

conda install -c conda-forge ca-certificates=2019.3.9=hecc5488_0 bash=4.4.18=h67949de_1000 gnuplot=5.2.6=h213187a_1 openssl=1.1.1b=h14c3975_1

Fail log

Collecting package metadata: done
Solving environment: done

## Package Plan ##

  environment location: /home/apps/anaconda3

  added / updated specs:
    - bash==4.4.18=h67949de_1000
    - ca-certificates==2019.3.9=hecc5488_0
    - gnuplot==5.2.6=h213187a_1
    - openssl==1.1.1b=h14c3975_1

The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    anaconda-custom            |           py37_0           6 KB
    atk-2.25.90                |    hb9dd440_1002         430 KB  conda-forge
    bash-4.4.18                |    h67949de_1000         1.7 MB  conda-forge
    ca-certificates-2019.3.9   |       hecc5488_0         146 KB  conda-forge
    cairo-1.16.0               |    ha4e643d_1000         1.5 MB  conda-forge
    certifi-2019.3.9           |           py37_0         149 KB  conda-forge
    chrpath-0.16               |    h14c3975_1001          29 KB  conda-forge
    conda-4.6.14               |           py37_0         2.1 MB  conda-forge
    dbus-1.13.6                |       he372182_0         602 KB  conda-forge
    fontconfig-2.13.1          |    he4413a7_1000         327 KB  conda-forge
    gdk-pixbuf-2.36.12         |    h49783d7_1002         592 KB  conda-forge
    gettext-0.19.8.1           |    hc5be6a0_1002         3.6 MB  conda-forge
    giflib-5.1.9               |       h516909a_0         108 KB  conda-forge
    glib-2.58.3                |    hf63aee3_1001         3.3 MB  conda-forge
    gnuplot-5.2.6              |       h213187a_1         1.1 MB  conda-forge
    gobject-introspection-1.58.2|py37h2da5eee_1000         1.2 MB  conda-forge
    gst-plugins-base-1.14.4    |    hdf3bae2_1001         6.7 MB  conda-forge
    gstreamer-1.14.4           |    h66beb1c_1001         4.5 MB  conda-forge
    gtk2-2.24.31               |    hb68c50a_1001         7.3 MB  conda-forge
    harfbuzz-2.4.0             |       h37c48d4_0         1.5 MB  conda-forge
    jpeg-9c                    |    h14c3975_1001         251 KB  conda-forge
    libgd-2.2.5                |    h0d07dcb_1005         292 KB  conda-forge
    libiconv-1.15              |    h516909a_1005         2.0 MB  conda-forge
    libuuid-2.32.1             |    h14c3975_1000          26 KB  conda-forge
    libwebp-1.0.2              |       h576950b_1         920 KB  conda-forge
    openssl-1.1.1b             |       h14c3975_1         4.0 MB  conda-forge
    pango-1.40.14              |    h4ea9474_1004         524 KB  conda-forge
    pixman-0.34.0              |    h14c3975_1003         595 KB  conda-forge
    qt-5.9.7                   |       h52cfd70_1        85.8 MB  conda-forge
    xorg-kbproto-1.0.7         |    h14c3975_1002          26 KB  conda-forge
    xorg-libice-1.0.9          |    h516909a_1004          58 KB  conda-forge
    xorg-libsm-1.2.3           |    h84519dc_1000          25 KB  conda-forge
    xorg-libx11-1.6.7          |    h14c3975_1000         940 KB  conda-forge
    xorg-libxext-1.3.4         |       h516909a_0          51 KB  conda-forge
    xorg-libxrender-0.9.10     |    h516909a_1002          31 KB  conda-forge
    xorg-libxt-1.1.5           |    h14c3975_1002         367 KB  conda-forge
    xorg-renderproto-0.11.1    |    h14c3975_1002           8 KB  conda-forge
    xorg-xextproto-7.3.0       |    h14c3975_1002          27 KB  conda-forge
    xorg-xproto-7.0.31         |    h14c3975_1007          72 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       132.9 MB

The following NEW packages will be INSTALLED:

  atk                conda-forge/linux-64::atk-2.25.90-hb9dd440_1002
  bash               conda-forge/linux-64::bash-4.4.18-h67949de_1000
  chrpath            conda-forge/linux-64::chrpath-0.16-h14c3975_1001
  gdk-pixbuf         conda-forge/linux-64::gdk-pixbuf-2.36.12-h49783d7_1002
  gettext            conda-forge/linux-64::gettext-0.19.8.1-hc5be6a0_1002
  giflib             conda-forge/linux-64::giflib-5.1.9-h516909a_0
  gnuplot            conda-forge/linux-64::gnuplot-5.2.6-h213187a_1
  gobject-introspec~ conda-forge/linux-64::gobject-introspection-1.58.2-py37h2da5eee_1000
  gtk2               conda-forge/linux-64::gtk2-2.24.31-hb68c50a_1001
  libgd              conda-forge/linux-64::libgd-2.2.5-h0d07dcb_1005
  libiconv           conda-forge/linux-64::libiconv-1.15-h516909a_1005
  libwebp            conda-forge/linux-64::libwebp-1.0.2-h576950b_1
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h14c3975_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.9-h516909a_1004
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-h84519dc_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.6.7-h14c3975_1000
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h516909a_0
  xorg-libxrender    conda-forge/linux-64::xorg-libxrender-0.9.10-h516909a_1002
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.1.5-h14c3975_1002
  xorg-renderproto   conda-forge/linux-64::xorg-renderproto-0.11.1-h14c3975_1002
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h14c3975_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h14c3975_1007

The following packages will be UPDATED:

  ca-certificates    pkgs/main::ca-certificates-2019.1.23-0 --> conda-forge::ca-certificates-2019.3.9-hecc5488_0
  cairo                 pkgs/main::cairo-1.14.12-h8948797_3 --> conda-forge::cairo-1.16.0-ha4e643d_1000
  fontconfig         pkgs/main::fontconfig-2.13.0-h9420a91~ --> conda-forge::fontconfig-2.13.1-he4413a7_1000
  glib                    pkgs/main::glib-2.56.2-hd408876_0 --> conda-forge::glib-2.58.3-hf63aee3_1001
  gst-plugins-base   pkgs/main::gst-plugins-base-1.14.0-hb~ --> conda-forge::gst-plugins-base-1.14.4-hdf3bae2_1001
  gstreamer          pkgs/main::gstreamer-1.14.0-hb453b48_1 --> conda-forge::gstreamer-1.14.4-h66beb1c_1001
  harfbuzz             pkgs/main::harfbuzz-1.8.8-hffaf4a1_0 --> conda-forge::harfbuzz-2.4.0-h37c48d4_0
  jpeg                        pkgs/main::jpeg-9b-h024ee3a_2 --> conda-forge::jpeg-9c-h14c3975_1001
  libuuid               pkgs/main::libuuid-1.0.3-h1bed415_2 --> conda-forge::libuuid-2.32.1-h14c3975_1000

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi                                         pkgs/main --> conda-forge
  conda                                           pkgs/main --> conda-forge
  dbus                    pkgs/main::dbus-1.13.6-h746ee38_0 --> conda-forge::dbus-1.13.6-he372182_0
  openssl              pkgs/main::openssl-1.1.1b-h7b6447c_1 --> conda-forge::openssl-1.1.1b-h14c3975_1
  pango                  pkgs/main::pango-1.42.4-h049681c_0 --> conda-forge::pango-1.40.14-h4ea9474_1004
  pixman                pkgs/main::pixman-0.38.0-h7b6447c_0 --> conda-forge::pixman-0.34.0-h14c3975_1003
  qt                         pkgs/main::qt-5.9.7-h5867ecd_1 --> conda-forge::qt-5.9.7-h52cfd70_1

The following packages will be DOWNGRADED:

  anaconda                                   2019.03-py37_0 --> custom-py37_0

Proceed ([y]/n)?

Downloading and Extracting Packages
xorg-kbproto-1.0.7   | 26 KB     | ############################################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: - ERROR conda.core.link:_execute_post_link_actions(658): An error occurred while installing package 'conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002'.
LinkError: post-link script failed for package conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002
running your command again with `-v` will provide additional information
location of failed script: /home/apps/anaconda3/bin/.gdk-pixbuf-post-link.sh
==> script messages <==
<None>

Attempting to roll back.
                                                                                                                                                        failed
ERROR conda.core.link:_execute(568): An error occurred while installing package 'conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002'.
LinkError: post-link script failed for package conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002
running your command again with `-v` will provide additional information
location of failed script: /home/apps/anaconda3/bin/.gdk-pixbuf-post-link.sh
==> script messages <==
<None>

Attempting to roll back.

Rolling back transaction: |
kftsehk commented 5 years ago

On cluster3, similar error occurs

Preparing transaction: done
Verifying transaction: done
Executing transaction: | ERROR conda.core.link:_execute_post_link_actions(658): An error occurred while installing package 'conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002'.
LinkError: post-link script failed for package conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002
running your command again with `-v` will provide additional information
location of failed script: /opt/anaconda3/bin/.gdk-pixbuf-post-link.sh
==> script messages <==
<None>

Attempting to roll back.
                                                                                                                            failed
ERROR conda.core.link:_execute(568): An error occurred while installing package 'conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002'.
LinkError: post-link script failed for package conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002
running your command again with `-v` will provide additional information
location of failed script: /opt/anaconda3/bin/.gdk-pixbuf-post-link.sh
==> script messages <==
<None>

Attempting to roll back.

Rolling back transaction: done

LinkError: post-link script failed for package conda-forge::gdk-pixbuf-2.36.12-h49783d7_1002
running your command again with `-v` will provide additional information
location of failed script: /opt/anaconda3/bin/.gdk-pixbuf-post-link.sh
==> script messages <==
<None>
kftsehk commented 5 years ago

Problem is in gnuplot==5.2.6=h213187a_1

kftsehk commented 5 years ago

Root problem is in app disk full.