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kfuku52 / RADTE

Divergence time estimation in the complex history of gene family evolution
MIT License
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chronos Error: missing value where TRUE/FALSE needed #8

Open kfuku52 opened 8 months ago

kfuku52 commented 8 months ago 
chronos, calibrated nodes: RS 

Setting initial dates...
Fitting in progress... get a first set of estimates
Error in if (sum(freq) > 1) return(-1e+100) : 
  missing value where TRUE/FALSE needed

chronos, calibrated nodes: S 

Setting initial dates...
Fitting in progress... get a first set of estimates
Error in if (sum(freq) > 1) return(-1e+100) : 
  missing value where TRUE/FALSE needed

chronos, calibrated nodes: R 

Setting initial dates...
Fitting in progress... get a first set of estimates
Error in if (sum(freq) > 1) return(-1e+100) : 
  missing value where TRUE/FALSE needed

Related to: https://github.com/emmanuelparadis/ape/issues/13

kfuku52 commented 8 months ago

Reproducible example:

R --no-echo --no-restore --file=radte.r --args --max_age=1000 --chronos_lambda=1 --chronos_model=discrete --pad_short_edge=0.001 --species_tree=species_tree.nwk --generax_nhx=gene_tree.nhx

issue_8.zip