kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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pandas.errors.EmptyDataError: No columns to parse from file #105

Closed kfuku52 closed 2 years ago

kfuku52 commented 2 years ago

Error in metadata

Traceback (most recent call last):
  File "/Users/kf/miniconda3/bin/amalgkit", line 380, in <module>
    args.handler(args)
  File "/Users/kf/miniconda3/bin/amalgkit", line 14, in command_metadata
    metadata_main(args)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/amalgkit/metadata.py", line 659, in metadata_main
    metadata.mark_exclude_ids()
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/amalgkit/metadata.py", line 288, in mark_exclude_ids
    config = pandas.read_csv(os.path.join(self.config_dir, 'exclude_id.config'),
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/util/_decorators.py", line 211, in wrapper
    return func(*args, **kwargs)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/util/_decorators.py", line 331, in wrapper
    return func(*args, **kwargs)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 950, in read_csv
    return _read(filepath_or_buffer, kwds)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 605, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1442, in __init__
    self._engine = self._make_engine(f, self.engine)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1753, in _make_engine
    return mapping[engine](f, **self.options)
  File "/Users/kf/miniconda3/lib/python3.9/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 79, in __init__
    self._reader = parsers.TextReader(src, **kwds)
  File "pandas/_libs/parsers.pyx", line 554, in pandas._libs.parsers.TextReader.__cinit__
pandas.errors.EmptyDataError: No columns to parse from file