Closed docxology closed 1 year ago
Thank you for bringing this to our attention! The repetition occurred because the information is relevant to both ruvseq and combatseq. We are currently in the process of refining the functions within curate. Once we conclude the active development phase, we will ensure that the Wiki is updated accordingly. For now, I updated the help messages.
https://github.com/kfuku52/amalgkit/commit/971642d13821780b8d2b599e55f2aba048ab5fe3
The sentence "If log-fpkm/tpm is set, transformation will be applied after batch-effect removal." is repeated twice.
Also I feel that this information could be useful in the Wiki for curate https://github.com/kfuku52/amalgkit/wiki/amalgkit-curate because some of these flags are not present there.