I'm thinking to obsolete the following config files for amalgkit metadata, while the other optional config files are still vital (at least for now):
search_term_exclusion.config
search_term_keyword.config
search_term_other.config
search_term_species.config
...and introduce --search_string that directly accepts an Entrez search string for a more flexible search term specification. The usage would look like:
amalgkit metadata --search_string '("platform illumina"[Properties]) AND ("type rnaseq"[Filter]) AND ("Nepenthaceae"[Organism]) NOT ("DNA"[Source])'
@Hego-CCTB Does it sound OK? I believe this update improves customizability, but please let me know if there are any concerns.
I'm thinking to obsolete the following config files for
amalgkit metadata
, while the other optional config files are still vital (at least for now):...and introduce
--search_string
that directly accepts an Entrez search string for a more flexible search term specification. The usage would look like:@Hego-CCTB Does it sound OK? I believe this update improves customizability, but please let me know if there are any concerns.