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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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curate infiles #24

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

@Hego-CCTB Some of the curate infile PATHs are handled in a weird way. It's jointed with --work_dir like below, so it assumes a truncated relative PATH to be provided. This is not something users can easily expect. Could you change them so that users can provide the full PATH or the complete, not truncated, relative PATH?

meta_out = os.path.join(args.work_dir, args.metadata)

(By the way, --metafile will be renamed to --metadata in curate in my next push to make it consistent with the other amalgkit subcommand.)

Hego-CCTB commented 3 years ago

curate should now require full paths.