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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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cstmm inputs #29

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

It looks like cstmm is decoupled from merge, because merge doesn't produce a directory which can be specified as --count in cstmm. Do you manually edit file names and directory structures?

kfuku52 commented 3 years ago

Patched by the above commit. merge now produces species-wise outputs. All species will appear in a single output directory, but they should be separately stored in species-wise directories in the future.

Hego-CCTB commented 3 years ago

Let's continue this here: https://github.com/kfuku52/amalgkit/issues/23

kfuku52 commented 3 years ago

The link would be wrong.

Hego-CCTB commented 3 years ago

fixed