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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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curate output files #36

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

curate generates all output files under --work_dir. They should be organized into sub-directories under amalgkit_out/curate/.

Hego-CCTB commented 3 years ago

Curate output is now in line with the rest of amalgkit:

-curate
   --tables
     ---Genus_species.*.pdf
   --plots
     ---Genus_species.*.tsv
  --rdata
     ---Genus_species.sva.round.RData

we could also additionally create a folder Genus_species between the tables/plots/rdata and curate. 0bb0dd0

kfuku52 commented 3 years ago

Thank you. This directory structure would be satisfactory for now. We can use this structure for a while and update it if it's not convenient enough.