obsoleted options in getfastq

kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics

BSD 3-Clause "New" or "Revised" License

7 stars 1 forks source link

obsoleted options in getfastq #44

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

NCBI no longer supports the aspera download, so we should obsolete these options.

--ascp yes|no         default=no: Download SRA files using ascp instead of http protocol.
  --ascp_exe PATH       default=ascp: PATH to ascp executable.
  --ascp_key PATH       default=: PATH to ascp key. See https://www.ncbi.nlm.nih.gov/books/NBK242625/
  --ascp_option STR     default=-v -k 1 -T -l 300m: ascp options.

Hego-CCTB commented 3 years ago

going to be removed in the csca update!

Hego-CCTB commented 3 years ago

obsoleted in ver. 0.6.0.0 https://github.com/kfuku52/amalgkit/issues/49