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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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Calls: get_mapping_rate -> [<- -> [<-.data.frame #55

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

Fixed in https://github.com/kfuku52/amalgkit/commit/12bf987bb7d022c4a86cc8693274086b80fb8e98

Number of SRA runs for this species: 952 
Number of SRA runs for selected tisssues: 952 
Number of non-excluded SRA runs (exclusion=="no"): 833 
Warning messages:
1: In xtfrm.data.frame(x) : cannot xtfrm data frames
2: In xtfrm.data.frame(x) : cannot xtfrm data frames
3: In xtfrm.data.frame(x) : cannot xtfrm data frames
Number of SRA row files in ./metadata/updated_metadata : 0 
Error in x[[jj]][iseq] <- vjj : replacement has length zero
Calls: get_mapping_rate -> [<- -> [<-.data.frame
Execution halted
Time elapsed: 38 sec
amalgkit curate: end