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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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bug caused by single quotes in the metadata table #57

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

These warnings were generated in curate, and caused by single quotes in the metadata tables. metadata has been modified to remove all single quotes. https://github.com/kfuku52/amalgkit/commit/8eae99e9fd4a4236717fc9f4fe63ace3752e460f

Warning messages:
1: In FUN(X[[i]], ...) :
  incomplete final line found by readTableHeader on '/Users/kef74yk/Dropbox (Personal)/collaborators/Daniel_Friedman/20210618_amalgkit/amalgkit_out/metadata/updated_metadata/metadata_SRR1036397.tsv'
2: In FUN(X[[i]], ...) :
  incomplete final line found by readTableHeader on '/Users/kef74yk/Dropbox (Personal)/collaborators/Daniel_Friedman/20210618_amalgkit/amalgkit_out/metadata/updated_metadata/metadata_SRR1036398.tsv'
3: In FUN(X[[i]], ...) :
  incomplete final line found by readTableHeader on '/Users/kef74yk/Dropbox (Personal)/collaborators/Daniel_Friedman/20210618_amalgkit/amalgkit_out/metadata/updated_metadata/metadata_SRR1036399.tsv'