search

kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
7 stars 1 forks source link

curate wiki #64

Closed kfuku52 closed 3 years ago

kfuku52 commented 3 years ago

@Hego-CCTB Could you include one more heatmap which shows the data before SVA & after outlier removal? https://github.com/kfuku52/amalgkit/wiki/Amalgkit-curate

Hego-CCTB commented 3 years ago

Where would you want to include this? As an example in the output section?

kfuku52 commented 3 years ago

The new heatmap should sit between the heatmaps 1 and 2, like Fig. 1 of this paper. https://www.nature.com/articles/s41467-020-18090-8

Hego-CCTB commented 3 years ago

Something akin to this? I've updated the workflow as well, to reflect the current state of amalgkit.

Screenshot 2021-07-08 at 16 32 25
kfuku52 commented 3 years ago

Great! Also, the numbers (2 and 3) in the workflow should be on arrows, not boxes, because it would be ambiguous whether the step (box) is applied already or not.

Hego-CCTB commented 3 years ago

Cool! I'll make the change and replace the current figure in the wiki.

Hego-CCTB commented 3 years ago

Done!