Closed kfuku52 closed 2 years ago
Running fastp. Command: fastp --thread 8 --length_required 25 -j /dev/null -h /dev/null --in1 /lustre7/home/lustre4/kfuku/my_project/nepenthes_gracilis/20211013_RNAseq/amalgkit_out/getfastq/SRR3581686/SRR3581686_1.fastq.gz --out1 /lustre7/home/lustre4/kfuku/my_project/nepenthes_gracilis/20211013_RNAseq/amalgkit_out/getfastq/SRR3581686/SRR3581686_1.fastp.fastq.gz fastp stdout: fastp stderr: Error to read gzip file Detecting adapter sequence for read1... Error to read gzip file No adapter detected for read1 ERROR: file '/lustre7/home/lustre4/kfuku/my_project/nepenthes_gracilis/20211013_RNAseq/amalgkit_out/getfastq/SRR3581686/SRR3581686_1.fastq.gz' doesn't exist, quit now --- getfastq final report --- Target size (--max_bp): 999,999,999,999,999 bp Sum of fastq_dump dumped reads: 1,159,831,050 bp Sum of fastq_dump rejected reads: 62,420,250 bp Sum of fastq_dump written reads: 1,097,410,800 bp Sum of fastp input reads: 0 bp Sum of fastp output reads: 0 bp Individual SRA IDs: SRR3581686 Individual fastq_dump dumped reads (bp): 1,159,831,050 Individual fastq_dump rejected reads (bp): 62,420,250 Individual fastq_dump written reads (bp): 1,097,410,800 Individual fastp input reads (bp): 0 Individual fastp output reads (bp): 0