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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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KeyError: 'lib_layout' #91

Closed kfuku52 closed 2 years ago

kfuku52 commented 2 years ago

getfastq with PRJNA591090

Traceback (most recent call last):
  File "/opt/conda/envs/biotools/bin/amalgkit", line 378, in <module>
    args.handler(args)
  File "/opt/conda/envs/biotools/bin/amalgkit", line 33, in command_getfastq
    getfastq_main(args)
  File "/opt/conda/envs/biotools/lib/python3.9/site-packages/amalgkit/getfastq.py", line 813, in getfastq_main
    metadata = getfastq_metadata(args)
  File "/opt/conda/envs/biotools/lib/python3.9/site-packages/amalgkit/getfastq.py", line 597, in getfastq_metadata
    layout = get_layout(args, metadata_dict[sra_id])
  File "/opt/conda/envs/biotools/lib/python3.9/site-packages/amalgkit/getfastq.py", line 160, in get_layout
    layouts = metadata.df['lib_layout'].unique().tolist()
  File "/opt/conda/envs/biotools/lib/python3.9/site-packages/pandas/core/frame.py", line 3458, in __getitem__
    indexer = self.columns.get_loc(key)
  File "/opt/conda/envs/biotools/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 3363, in get_loc
    raise KeyError(key) from err
KeyError: 'lib_layout'