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kfuku52 / amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
BSD 3-Clause "New" or "Revised" License
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ERROR: cannot convert float NaN to integer #98

Closed kfuku52 closed 2 years ago

kfuku52 commented 2 years ago 
amalgkit quant \
> --out_dir "./" \
> --threads ${NSLOTS} \
> --metadata "./metadata/metadata.tsv" \
> --clean_fastq no
amalgkit quant: start

Species: Asarum_ampulliflorum
Run ID: OY_10
looking for index folder in  ./
Index file found: ./Index/Asarum_ampulliflorum_longestCDS.transcript.fa.index
Output file was not detected: ./quant/OY_10/OY_10_abundance.tsv
ERROR:  cannot convert float NaN to integer