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kfuku52 / csubst

Molecular convergence detection
BSD 3-Clause "New" or "Revised" License
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optimizing sub_tensor axes #1

Closed kfuku52 closed 3 years ago

kfuku52 commented 4 years ago

Adding one dimension will allow seamless processing of posterior probabilities and other stochastic distributions of substitution processes. Also, it's more intuitive to place the codon site axis before the matrix group axis.

current axes

  1. branch
  2. matrix group
  3. codon site
  4. ancestral codon state
  5. derived codon state

new axes

  1. replicate
  2. branch
  3. codon site
  4. matrix group
  5. ancestral codon state
  6. derived codon state
kfuku52 commented 3 years ago

Done in the next push.